Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20601
(536 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 35 0.032
Z78542-3|CAB01745.2| 463|Caenorhabditis elegans Hypothetical pr... 31 0.53
Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical pr... 31 0.53
AF067936-6|AAC19214.1| 348|Caenorhabditis elegans Ground-like (... 30 1.2
Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical pr... 29 1.6
AF125971-9|AAD14764.1| 442|Caenorhabditis elegans Hypothetical ... 29 1.6
Z66496-5|CAA91280.2| 507|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z49127-2|CAA88949.1| 245|Caenorhabditis elegans Hypothetical pr... 29 2.1
U25032-1|AAB18670.1| 1379|Caenorhabditis elegans par-3 protein. 28 3.7
U00067-5|ABD63219.1| 1340|Caenorhabditis elegans Abnormal embryo... 28 3.7
U00067-4|AAK73874.1| 1376|Caenorhabditis elegans Abnormal embryo... 28 3.7
U00067-3|AAK73875.1| 1379|Caenorhabditis elegans Abnormal embryo... 28 3.7
AF229855-1|AAF71303.1| 1497|Caenorhabditis elegans dual oxidase ... 28 3.7
AF067947-4|AAC19230.1| 300|Caenorhabditis elegans Hypothetical ... 27 6.5
Z83316-4|CAB54187.3| 1050|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z83316-3|CAB05895.3| 1054|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z73105-4|CAA97443.2| 1406|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z69384-10|CAA93420.2| 1406|Caenorhabditis elegans Hypothetical p... 27 8.6
U41547-4|AAA83194.3| 376|Caenorhabditis elegans Hypothetical pr... 27 8.6
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 27 8.6
U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical p... 27 8.6
AF043697-1|AAK73882.1| 1497|Caenorhabditis elegans Blistered cut... 27 8.6
AF003139-11|AAK73871.1| 1503|Caenorhabditis elegans Hypothetical... 27 8.6
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 35.1 bits (77), Expect = 0.032
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +3
Query: 186 EPEPAYPVETSKYVERSTQADPAINTYPQNNYAPPQNSYYPQNTYAPP 329
+ +P P Y + Q P ++ P N++APP ++PQ+ PP
Sbjct: 45 QQQPNLPPPQQPYEHPAQQHPPQHHSVPPNSFAPPPGQHHPQHPGMPP 92
>Z78542-3|CAB01745.2| 463|Caenorhabditis elegans Hypothetical
protein F20D1.3 protein.
Length = 463
Score = 31.1 bits (67), Expect = 0.53
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Frame = +3
Query: 180 TFEPEP-AYPVETSKYVERSTQADPAINTYPQNNYAPP--QNSYYPQNTYAPPQNTY 341
T+ P P AYP K ++P+ YP NNY Q P +Y P Q+ Y
Sbjct: 357 TYNPAPPAYPSLDEKSGNPPYPSNPSNQPYPSNNYGNQGGQGQAPPYPSYNPNQSNY 413
>Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical
protein T04F8.8 protein.
Length = 165
Score = 31.1 bits (67), Expect = 0.53
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +3
Query: 186 EPEPAYPVETSKYVERSTQADPAINTYPQNNYAP-PQNSYYPQNTYAPPQNTY 341
EPEP E + Q +P P+ + P P+ P N+YA P N+Y
Sbjct: 107 EPEPEPRPEPQPEPQPEPQPEPQPEPQPEPHPEPAPEPIVKPYNSYAQPHNSY 159
>AF067936-6|AAC19214.1| 348|Caenorhabditis elegans Ground-like (grd
related) protein 1 protein.
Length = 348
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Frame = +3
Query: 201 YPVETSKYVERSTQADPAINTYPQNNYAP---PQNSYYPQNTYAPPQNTYR 344
Y ++ Y + Q PA T Q +Y P PQ++ P Y P NTY+
Sbjct: 24 YMCGSANYYQAYAQQQPATATRYQASYIPQQMPQHTSQPMIQYYYPANTYQ 74
>Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical
protein ZK287.4 protein.
Length = 1208
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/51 (29%), Positives = 21/51 (41%)
Frame = +3
Query: 189 PEPAYPVETSKYVERSTQADPAINTYPQNNYAPPQNSYYPQNTYAPPQNTY 341
P+P Y + T P+ N YP + PP + P T PP +Y
Sbjct: 665 PDP-YVISNPIPTLSPTAGTPSFNIYPYPSLPPPTTTISPLPTLLPPNISY 714
>AF125971-9|AAD14764.1| 442|Caenorhabditis elegans Hypothetical
protein Y4C6B.1 protein.
Length = 442
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +2
Query: 230 TVHPSRSSHKHLSPKQLRPPSKLILSSEYLCTSSKHLSSHLE 355
TV PS+ + K SPK L PP++ I+S+ T H S L+
Sbjct: 343 TVTPSKPAEKKSSPKSL-PPAETIVSNRPYLTDIAHGRSMLK 383
>Z66496-5|CAA91280.2| 507|Caenorhabditis elegans Hypothetical
protein E04D5.3 protein.
Length = 507
Score = 29.1 bits (62), Expect = 2.1
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +3
Query: 183 FEPEPA-YPVETSKYVERSTQADPAINTYPQNNYAPPQNSYYPQNTYAPPQNTY 341
+ PA YPV +S+Y +TQA PA +YP ++ APP N Y PQ Y
Sbjct: 309 YPTRPANYPVASSRYPIPTTQA-PA--SYP-SSPAPPPPGADIDNGYPEPQPIY 358
>Z49127-2|CAA88949.1| 245|Caenorhabditis elegans Hypothetical
protein F13D12.3 protein.
Length = 245
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Frame = +3
Query: 234 STQADPAINTYPQNNYAPPQNSY-YPQNTYAP---PQNTY 341
S+ P+ PQ +Y+PP++SY P+ TY+P P ++Y
Sbjct: 76 SSYGRPSSYGPPQPSYSPPKSSYGRPEPTYSPYSRPSSSY 115
>U25032-1|AAB18670.1| 1379|Caenorhabditis elegans par-3 protein.
Length = 1379
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 222 YVERSTQADPAINTYPQNNYAPPQNSYYPQNTYAPPQNT 338
Y ++ST + INT NY P ++ Y + PPQ +
Sbjct: 1139 YRQQSTSGNSPINTSSYVNYGLPASNAYHVGSRIPPQTS 1177
>U00067-5|ABD63219.1| 1340|Caenorhabditis elegans Abnormal embryonic
partitioningof cytoplasm protein 3, isoform c protein.
Length = 1340
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 222 YVERSTQADPAINTYPQNNYAPPQNSYYPQNTYAPPQNT 338
Y ++ST + INT NY P ++ Y + PPQ +
Sbjct: 1100 YRQQSTSGNSPINTSSYVNYGLPASNAYHVGSRIPPQTS 1138
>U00067-4|AAK73874.1| 1376|Caenorhabditis elegans Abnormal embryonic
partitioningof cytoplasm protein 3, isoform a protein.
Length = 1376
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 222 YVERSTQADPAINTYPQNNYAPPQNSYYPQNTYAPPQNT 338
Y ++ST + INT NY P ++ Y + PPQ +
Sbjct: 1136 YRQQSTSGNSPINTSSYVNYGLPASNAYHVGSRIPPQTS 1174
>U00067-3|AAK73875.1| 1379|Caenorhabditis elegans Abnormal embryonic
partitioningof cytoplasm protein 3, isoform b protein.
Length = 1379
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 222 YVERSTQADPAINTYPQNNYAPPQNSYYPQNTYAPPQNT 338
Y ++ST + INT NY P ++ Y + PPQ +
Sbjct: 1139 YRQQSTSGNSPINTSSYVNYGLPASNAYHVGSRIPPQTS 1177
>AF229855-1|AAF71303.1| 1497|Caenorhabditis elegans dual oxidase
protein.
Length = 1497
Score = 28.3 bits (60), Expect = 3.7
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -3
Query: 402 SLGRELL*SKSDMKACSRWDDRCFEEVHRYSEDSMSF 292
++ RE L S MKA + + R F + +++EDS+SF
Sbjct: 803 TISREELASAMGMKANNEFVKRMFAMIAKHNEDSLSF 839
>AF067947-4|AAC19230.1| 300|Caenorhabditis elegans Hypothetical
protein T10B5.7 protein.
Length = 300
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -3
Query: 330 EEVHRYSEDSMSFEGGRNCFGD 265
E+ HRY +SF G RNC GD
Sbjct: 276 EDHHRYFGMFISFYGRRNCTGD 297
>Z83316-4|CAB54187.3| 1050|Caenorhabditis elegans Hypothetical
protein B0379.3b protein.
Length = 1050
Score = 27.1 bits (57), Expect = 8.6
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = +3
Query: 189 PEPAYPVETSKYVERSTQADPAINTYPQNNYAPPQNSYYPQNTYAPPQ 332
P P PV S+ + Q N++P Y P Q +Y PQ PQ
Sbjct: 700 PAPP-PVNQSQPANQPMQTAVYQNSHPGAPYIPQQPTYQPQLPVQQPQ 746
>Z83316-3|CAB05895.3| 1054|Caenorhabditis elegans Hypothetical
protein B0379.3a protein.
Length = 1054
Score = 27.1 bits (57), Expect = 8.6
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = +3
Query: 189 PEPAYPVETSKYVERSTQADPAINTYPQNNYAPPQNSYYPQNTYAPPQ 332
P P PV S+ + Q N++P Y P Q +Y PQ PQ
Sbjct: 704 PAPP-PVNQSQPANQPMQTAVYQNSHPGAPYIPQQPTYQPQLPVQQPQ 750
>Z73105-4|CAA97443.2| 1406|Caenorhabditis elegans Hypothetical protein
T11G6.5 protein.
Length = 1406
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +3
Query: 243 ADPAINTY--PQNNYAPPQNSYYPQNTYAPPQNTYR 344
A P I+ P NNY+ P S+ P Y P N R
Sbjct: 1153 APPGISNLNRPGNNYSGPSQSFRPNQQYNPNFNHQR 1188
>Z69384-10|CAA93420.2| 1406|Caenorhabditis elegans Hypothetical
protein T11G6.5 protein.
Length = 1406
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +3
Query: 243 ADPAINTY--PQNNYAPPQNSYYPQNTYAPPQNTYR 344
A P I+ P NNY+ P S+ P Y P N R
Sbjct: 1153 APPGISNLNRPGNNYSGPSQSFRPNQQYNPNFNHQR 1188
>U41547-4|AAA83194.3| 376|Caenorhabditis elegans Hypothetical
protein F22A3.1 protein.
Length = 376
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -3
Query: 426 HHNTFHS*SLGRELL*SKSDMKACSRWDDR 337
H T H RELL AC RW DR
Sbjct: 284 HQGTVHLWQFIRELLDQPKQYSACVRWVDR 313
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 27.1 bits (57), Expect = 8.6
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Frame = +3
Query: 189 PEPAYPVETSKYVERSTQADPAINTYPQNNYAPPQNSYYPQNTY---APPQNTY 341
P P P + + YVE+S Q PQ PP + YPQ APP Y
Sbjct: 27 PPPPPPPKPAPYVEQSAQ--------PQQTAPPPPPAPYPQQAVPAPAPPPAPY 72
>U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical
protein C39D10.7 protein.
Length = 1185
Score = 27.1 bits (57), Expect = 8.6
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 279 YAPPQNSYYPQNTYAPPQN 335
Y+PP+ +Y P++T A P N
Sbjct: 299 YSPPRTTYVPRSTSAAPPN 317
>AF043697-1|AAK73882.1| 1497|Caenorhabditis elegans Blistered
cuticle protein 3 protein.
Length = 1497
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -3
Query: 402 SLGRELL*SKSDMKACSRWDDRCFEEVHRYSEDSMSF 292
++ RE L S MKA + + R F +++EDS+SF
Sbjct: 803 TISREELASAMGMKANNEFVKRMFAMTAKHNEDSLSF 839
>AF003139-11|AAK73871.1| 1503|Caenorhabditis elegans Hypothetical
protein F53G12.3 protein.
Length = 1503
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -3
Query: 402 SLGRELL*SKSDMKACSRWDDRCFEEVHRYSEDSMSF 292
++ RE L S MKA + + R F +++EDS+SF
Sbjct: 811 TISREELASAMGMKANNEFVKRMFAMTAKHNEDSLSF 847
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,020,309
Number of Sequences: 27780
Number of extensions: 210492
Number of successful extensions: 824
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -