Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20601
         (536 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   2.0  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   2.0  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    22   3.5  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   4.6  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   4.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   6.0  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   8.0  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    21   8.0  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    21   8.0  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    21   8.0  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    21   8.0  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   8.0  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   8.0  

>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 17/67 (25%), Positives = 23/67 (34%)
 Frame = +3

Query: 228 ERSTQADPAINTYPQNNYAPPQNSYYPQNTYAPPQNTYRXXXXXXXXXXXXXXXXVPVIK 407
           ER T  +P I +   NNY     + Y  N      N Y                 +PV  
Sbjct: 72  ERETSKEPKIISSLSNNYKYSNYNNYNNNYNNNYNNNYNNNYKKLYKNYIINIEQIPV-P 130

Query: 408 NEMYYGD 428
             +YYG+
Sbjct: 131 VPVYYGN 137


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 17/67 (25%), Positives = 23/67 (34%)
 Frame = +3

Query: 228 ERSTQADPAINTYPQNNYAPPQNSYYPQNTYAPPQNTYRXXXXXXXXXXXXXXXXVPVIK 407
           ER T  +P I +   NNY     + Y  N      N Y                 +PV  
Sbjct: 72  ERETSKEPKIISSLSNNYKYSNYNNYNNNYNNNYNNNYNNNYKKLYKNYIINIEQIPV-P 130

Query: 408 NEMYYGD 428
             +YYG+
Sbjct: 131 VPVYYGN 137


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 393 VPVIKNEMYYGDNGSYKYEY 452
           V V +NE Y GD+    Y+Y
Sbjct: 109 VAVCRNEEYTGDDCQKTYQY 128


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +3

Query: 405 KNEMYYGDNGSYKYEYQIADGTHVGEEGYFTN 500
           KNE   G   +YK E  + D   V + G   N
Sbjct: 112 KNENCSGITSAYKIEIDMCDRLWVLDSGLINN 143


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +2

Query: 236 HPSRSSHKHLSPKQLRPPSKLILSSEYLCTSSKHLSSH 349
           H     H HL+    R PS    +S+   T+S   S+H
Sbjct: 666 HTQSQLHLHLTSPPARSPSSQAQASQCPQTASLLSSTH 703


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 10/35 (28%), Positives = 13/35 (37%)
 Frame = +3

Query: 228  ERSTQADPAINTYPQNNYAPPQNSYYPQNTYAPPQ 332
            +++ Q  P      Q    P Q S  PQ     PQ
Sbjct: 1498 QKTQQQQPQQQQQQQQQQQPQQQSQQPQQQQPQPQ 1532


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -3

Query: 459  RFDTRICNCHYHHNTFHS*SLGRELL*SKSDMKAC 355
            R DT +    YHHN     ++ R  +  ++D K C
Sbjct: 1669 RLDTEMSTWGYHHNVNKHCTIHRTQV-KETDDKIC 1702


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -3

Query: 258 LWLDRLGWTV 229
           +WL  LGWT+
Sbjct: 175 IWLFSLGWTI 184


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = +3

Query: 228 ERSTQADPAINTYPQNNYAPPQNSYYPQNTY 320
           ER    +P I +   NNY     + Y  N Y
Sbjct: 72  ERERSKEPKIISSLSNNYKYSNYNNYNNNNY 102


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = +3

Query: 228 ERSTQADPAINTYPQNNYAPPQNSYYPQNTY 320
           ER    +P I +   NNY     + Y  N Y
Sbjct: 72  ERERSKEPKIISSLSNNYKYSNYNNYNNNNY 102


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = +3

Query: 228 ERSTQADPAINTYPQNNYAPPQNSYYPQNTY 320
           ER    +P I +   NNY     + Y  N Y
Sbjct: 72  ERERSKEPKIISSLSNNYKYSNYNNYNNNNY 102


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = +3

Query: 228 ERSTQADPAINTYPQNNYAPPQNSYYPQNTY 320
           ER    +P I +   NNY     + Y  N Y
Sbjct: 72  ERERSKEPKIISSLSNNYKYSNYNNYNNNNY 102


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -3

Query: 258 LWLDRLGWTV 229
           +WL  LGWT+
Sbjct: 141 IWLFSLGWTI 150


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -3

Query: 258 LWLDRLGWTV 229
           +WL  LGWT+
Sbjct: 51  IWLFSLGWTI 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,752
Number of Sequences: 438
Number of extensions: 2958
Number of successful extensions: 20
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)