Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20601
(536 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59170.1 68418.m07416 proline-rich family protein contains pr... 36 0.013
At4g34150.1 68417.m04846 C2 domain-containing protein similar to... 35 0.040
At3g07100.1 68416.m00845 protein transport protein Sec24, putati... 31 0.37
At1g12040.1 68414.m01390 leucine-rich repeat family protein / ex... 31 0.49
At4g23470.2 68417.m03383 hydroxyproline-rich glycoprotein family... 30 0.85
At4g23470.1 68417.m03382 hydroxyproline-rich glycoprotein family... 30 0.85
At3g49840.1 68416.m05449 proline-rich family protein contains pr... 30 1.1
At2g27090.1 68415.m03255 expressed protein contains Pfam domains... 29 2.6
At1g31750.1 68414.m03895 proline-rich family protein contains pr... 29 2.6
At1g09070.1 68414.m01012 C2 domain-containing protein / src2-lik... 29 2.6
At4g34440.1 68417.m04894 protein kinase family protein contains ... 28 3.4
At5g26080.1 68418.m03103 proline-rich family protein contains pr... 28 4.5
At5g15140.1 68418.m01774 aldose 1-epimerase family protein simil... 28 4.5
At5g45350.1 68418.m05567 proline-rich family protein contains pr... 27 6.0
At5g38560.1 68418.m04662 protein kinase family protein contains ... 27 6.0
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex... 27 6.0
At1g01510.1 68414.m00067 C-terminal binding protein (ANGUSTIFOLI... 27 6.0
At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest ... 27 7.9
>At5g59170.1 68418.m07416 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 288
Score = 36.3 bits (80), Expect = 0.013
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Frame = +3
Query: 174 VRTFEPEPAYPVETSKYVERSTQADPAINTYPQ-NNYAPPQNSYYPQNTYAPPQNTY 341
++ + P YP KY + Q P I YP Y PP Y P Y PP Y
Sbjct: 150 IKKYPPPEHYPPPIKKYPPQE-QYPPPIKKYPPPEKYPPPIKKYPPPEQYPPPIKKY 205
Score = 35.5 bits (78), Expect = 0.023
Identities = 17/55 (30%), Positives = 19/55 (34%)
Frame = +3
Query: 177 RTFEPEPAYPVETSKYVERSTQADPAINTYPQNNYAPPQNSYYPQNTYAPPQNTY 341
+ + P YP KY P PQ Y PP Y P Y PP Y
Sbjct: 138 KKYPPPEQYPPPIKKYPPPEHYPPPIKKYPPQEQYPPPIKKYPPPEKYPPPIKKY 192
Score = 34.7 bits (76), Expect = 0.040
Identities = 19/54 (35%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Frame = +3
Query: 183 FEPEPAYPVETSKYVERSTQADPAINTYPQ-NNYAPPQNSYYPQNTYAPPQNTY 341
+ P YP KY Q P I YP Y+PP Y P Y PP Y
Sbjct: 101 YPPPEQYPPPIKKYPPPE-QYPPPIKKYPPPEQYSPPFKKYPPPEQYPPPIKKY 153
Score = 34.7 bits (76), Expect = 0.040
Identities = 16/56 (28%), Positives = 20/56 (35%)
Frame = +3
Query: 174 VRTFEPEPAYPVETSKYVERSTQADPAINTYPQNNYAPPQNSYYPQNTYAPPQNTY 341
++ + P YP KY + P P Y PP Y P Y PP Y
Sbjct: 111 IKKYPPPEQYPPPIKKYPPPEQYSPPFKKYPPPEQYPPPIKKYPPPEHYPPPIKKY 166
Score = 34.7 bits (76), Expect = 0.040
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Frame = +3
Query: 174 VRTFEPEPAYPVETSKYVERSTQADPAINTYPQ-NNYAPPQNSYYPQNTYAPPQNTY 341
++ + P Y KY Q P I YP +Y PP Y PQ Y PP Y
Sbjct: 124 IKKYPPPEQYSPPFKKYPPPE-QYPPPIKKYPPPEHYPPPIKKYPPQEQYPPPIKKY 179
Score = 32.7 bits (71), Expect = 0.16
Identities = 19/56 (33%), Positives = 22/56 (39%)
Frame = +3
Query: 174 VRTFEPEPAYPVETSKYVERSTQADPAINTYPQNNYAPPQNSYYPQNTYAPPQNTY 341
++ + P YP KY Q P I YP PP Y P Y PP TY
Sbjct: 176 IKKYPPPEKYPPPIKKYPPPE-QYPPPIKKYP-----PPIKKYPPPEEYPPPIKTY 225
Score = 32.3 bits (70), Expect = 0.21
Identities = 19/52 (36%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Frame = +3
Query: 189 PEPAYPVETSKYVERSTQADPAINTYPQ-NNYAPPQNSYYPQNTYAPPQNTY 341
P YP KY Q P I YP Y PP Y P Y+PP Y
Sbjct: 90 PIKTYPHPPVKYPPPE-QYPPPIKKYPPPEQYPPPIKKYPPPEQYSPPFKKY 140
Score = 31.5 bits (68), Expect = 0.37
Identities = 15/56 (26%), Positives = 19/56 (33%)
Frame = +3
Query: 174 VRTFEPEPAYPVETSKYVERSTQADPAINTYPQNNYAPPQNSYYPQNTYAPPQNTY 341
++ + P+ YP KY P P Y PP Y P PP Y
Sbjct: 163 IKKYPPQEQYPPPIKKYPPPEKYPPPIKKYPPPEQYPPPIKKYPPPIKKYPPPEEY 218
Score = 29.1 bits (62), Expect = 2.0
Identities = 18/52 (34%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Frame = +3
Query: 189 PEPAYPVETSKYVER--STQADPAINTYPQNNYAPPQNSYY---PQNTYAPP 329
P YP KY T P I TYP PP +Y P+ Y PP
Sbjct: 221 PIKTYPHPPVKYPPPPYKTYPHPPIKTYPPPKECPPPPEHYPWPPKKKYPPP 272
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/56 (26%), Positives = 18/56 (32%)
Frame = +3
Query: 174 VRTFEPEPAYPVETSKYVERSTQADPAINTYPQNNYAPPQNSYYPQNTYAPPQNTY 341
+ + P YP KY + P P Y P Y P Y PP Y
Sbjct: 59 IEKYPPPVQYPPPIKKYPPPPYEHPPVKYPPPIKTYPHPPVKYPPPEQYPPPIKKY 114
>At4g34150.1 68417.m04846 C2 domain-containing protein similar to
calcium-dependent protein kinase [Dunaliella
tertiolecta] GI:6644464; contains Pfam profile PF00168:
C2 domain
Length = 247
Score = 34.7 bits (76), Expect = 0.040
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +3
Query: 183 FEPEPAYPVETSKYVERSTQADPAI-NTYPQNNYAPPQNSYYPQNTYAPPQNTY 341
+ P YP + S Y ST P I + YP PP +S YP Y PPQ +Y
Sbjct: 184 YPPASGYPPQPSAYPPPSTSGYPPIPSAYPP----PPPSSAYPPQPY-PPQPSY 232
Score = 34.3 bits (75), Expect = 0.052
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = +3
Query: 183 FEPEP-AYPV-ETSKY--VERSTQADPAINTYPQNNYAPPQNSYYPQNTY 320
+ P+P AYP TS Y + + P + YP Y PPQ SYYPQ Y
Sbjct: 190 YPPQPSAYPPPSTSGYPPIPSAYPPPPPSSAYPPQPY-PPQPSYYPQGPY 238
Score = 30.3 bits (65), Expect = 0.85
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 249 PAINTYPQNNYAPPQNSYYPQNTYAPPQNT 338
P + YPQ + PP + Y PQ + PP +T
Sbjct: 173 PQVQQYPQPSGYPPASGYPPQPSAYPPPST 202
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +3
Query: 189 PEPAYPVETSKYVERSTQADPAINTYPQNNYAPPQNSYYPQNTYAPPQNTY 341
P+ + P S Y + P++ YPQ P + Y P + Y P + Y
Sbjct: 149 PQYSAPPSASPYSTAPPYSGPSL--YPQVQQYPQPSGYPPASGYPPQPSAY 197
>At3g07100.1 68416.m00845 protein transport protein Sec24, putative
similar to protein transport protein Sec24A
(SEC24-related protein) [Homo sapiens] SWISS-PROT:O95486
Length = 1038
Score = 31.5 bits (68), Expect = 0.37
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +3
Query: 189 PEPAYPVETSKYVERSTQADPAINTYPQNNYAPPQNSYYPQNTYAPP 329
P PA PV T R Q P ++ P + PP ++ +P Y PP
Sbjct: 63 PPPAPPVGTM----RPGQPSPFVSQIPGSRPPPPSSNSFPSPAYGPP 105
>At1g12040.1 68414.m01390 leucine-rich repeat family protein /
extensin family protein (LRX1) similar to extensin-like
protein [Lycopersicon esculentum]
gi|5917664|gb|AAD55979; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 744
Score = 31.1 bits (67), Expect = 0.49
Identities = 16/50 (32%), Positives = 19/50 (38%)
Frame = +3
Query: 180 TFEPEPAYPVETSKYVERSTQADPAINTYPQNNYAPPQNSYYPQNTYAPP 329
T P P PV + P N+ PP YYP TY+PP
Sbjct: 549 TQSPPPPSPVYYPPVTQSPPPPSPVYYPPVTNSPPPPSPVYYPPVTYSPP 598
Score = 29.9 bits (64), Expect = 1.1
Identities = 19/52 (36%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Frame = +3
Query: 180 TFEPEPAYPVETSKYVERSTQADPAINTYPQNNYAPPQNS--YYPQNTYAPP 329
T P P PV P YP Y+PP S YYPQ T +PP
Sbjct: 564 TQSPPPPSPVYYPPVTNSPPPPSPVY--YPPVTYSPPPPSPVYYPQVTPSPP 613
>At4g23470.2 68417.m03383 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 199
Score = 30.3 bits (65), Expect = 0.85
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +3
Query: 183 FEPEPAYPVETSKYVERSTQADPAINTYPQNNYAPPQNSY--YPQNTYAPP 329
+ P+ YP S Y + Q P + YPQN PP ++Y YP Y PP
Sbjct: 150 YPPQQGYP--PSGYPQHPPQGYPP-SGYPQN---PPPSAYSQYPPGAYPPP 194
Score = 27.9 bits (59), Expect = 4.5
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Frame = +3
Query: 183 FEPEPAYPVETSKYVERSTQADP-AINTYPQNNYAPPQNSYYPQNTYAP---PQN 335
F P+P V ++ + R QA P A+ PQ Y P +P Y P PQN
Sbjct: 124 FGPQPM-AVPPAQQMSRFDQATPPAVGYPPQQGYPPSGYPQHPPQGYPPSGYPQN 177
>At4g23470.1 68417.m03382 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 255
Score = 30.3 bits (65), Expect = 0.85
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +3
Query: 183 FEPEPAYPVETSKYVERSTQADPAINTYPQNNYAPPQNSY--YPQNTYAPP 329
+ P+ YP S Y + Q P + YPQN PP ++Y YP Y PP
Sbjct: 206 YPPQQGYP--PSGYPQHPPQGYPP-SGYPQN---PPPSAYSQYPPGAYPPP 250
Score = 27.9 bits (59), Expect = 4.5
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Frame = +3
Query: 183 FEPEPAYPVETSKYVERSTQADP-AINTYPQNNYAPPQNSYYPQNTYAP---PQN 335
F P+P V ++ + R QA P A+ PQ Y P +P Y P PQN
Sbjct: 180 FGPQPM-AVPPAQQMSRFDQATPPAVGYPPQQGYPPSGYPQHPPQGYPPSGYPQN 233
>At3g49840.1 68416.m05449 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 606
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Frame = +3
Query: 264 YPQNNYAPPQNSY---YPQNTYAPPQ 332
YP Y PPQ Y YP Y PPQ
Sbjct: 527 YPPAGYPPPQQGYGQGYPAQGYPPPQ 552
>At2g27090.1 68415.m03255 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 743
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = +3
Query: 192 EPAYPVETSKYVERSTQADPAINTYPQN----NYAPPQNSYYPQNTYAPP 329
E PVE+S Y S + + ++ +Y+PP S+ +TY+PP
Sbjct: 57 ETEVPVESSLYTSTSATPEQPLALIEKSVSHLSYSPPPASHSHHDTYSPP 106
>At1g31750.1 68414.m03895 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 176
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = +3
Query: 243 ADPAINTYPQNNYAPPQNSYYPQNTYAPPQNTY 341
A P YP Y PP + YP Y PP Y
Sbjct: 36 AYPPPGGYPPQGYPPPPHG-YPPAAYPPPPGAY 67
>At1g09070.1 68414.m01012 C2 domain-containing protein / src2-like
protein, putative similar to cold-regulated gene SRC2
[Glycine max] GI:2055230; contains Pfam profile PF00168:
C2 domain; identical to cDNA src2-like protein
GI:3426059
Length = 324
Score = 28.7 bits (61), Expect = 2.6
Identities = 18/51 (35%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Frame = +3
Query: 183 FEPEPAYPVETSKYVERSTQADPAINTYP-QNNYAPPQNSYYPQNTYAPPQ 332
+ P AYP + Y Q YP Q Y PQ Y PQ Y PQ
Sbjct: 215 YPPPGAYP-QQGGYPGYPPQQQGGYPGYPPQGPYGYPQQGYPPQGPYGYPQ 264
>At4g34440.1 68417.m04894 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 670
Score = 28.3 bits (60), Expect = 3.4
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +3
Query: 204 PVETSKYVERSTQADPAINTYPQNNYAP--PQNSYYPQNTYAPP 329
PV++S E S P+ T P N +P P +S P + APP
Sbjct: 5 PVDSSPAPETSNGTPPSNGTSPSNESSPPTPPSSPPPSSISAPP 48
>At5g26080.1 68418.m03103 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 141
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/47 (29%), Positives = 18/47 (38%)
Frame = +3
Query: 189 PEPAYPVETSKYVERSTQADPAINTYPQNNYAPPQNSYYPQNTYAPP 329
P P Y + + P YP Y+PP YP Y+PP
Sbjct: 56 PPPVYSRPVAFPPPPPIYSPPPPPIYPPPIYSPPPPPIYPPPIYSPP 102
>At5g15140.1 68418.m01774 aldose 1-epimerase family protein similar
to SP|P05149 Aldose 1-epimerase precursor (EC 5.1.3.3)
(Mutarotase) from Acinetobacter calcoaceticus; contains
Pfam profile PF01263 Aldose 1-epimerase
Length = 490
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +1
Query: 25 LILIVAAFLAVTFADNVE-SDKEIEDSEAAESV 120
L++ + ++VTFADNVE K++E S+ + V
Sbjct: 12 LLVTLGVVISVTFADNVELKSKDLESSKKDKKV 44
>At5g45350.1 68418.m05567 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 177
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/30 (40%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Frame = +3
Query: 264 YPQNNYAPPQNSY----YPQNTYAPPQNTY 341
YPQ Y PP +Y YP Y P Y
Sbjct: 32 YPQQGYPPPPGAYPPAGYPPGAYPPAPGGY 61
>At5g38560.1 68418.m04662 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 681
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +3
Query: 195 PAYPVETSKYVERSTQADPAINTYPQNNYAPPQNSYYPQNTYAPP 329
P P+ + ST A P + T P APP + P +PP
Sbjct: 5 PPLPILSPPSSNSSTTAPPPLQTQPTTPSAPPPVTPPPSPPQSPP 49
>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 826
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/55 (25%), Positives = 22/55 (40%)
Frame = +3
Query: 177 RTFEPEPAYPVETSKYVERSTQADPAINTYPQNNYAPPQNSYYPQNTYAPPQNTY 341
+T P YP + Y + ++ P Q+ PP +YY + PP Y
Sbjct: 585 QTPSPREYYPSPSPPYYQYTSSPPPPTYYATQSPPPPPPPTYYAVQSPPPPPPVY 639
>At1g01510.1 68414.m00067 C-terminal binding protein (ANGUSTIFOLIA)
nearly identical to C-terminal binding protein
ANGUSTIFOLIA [Arabidopsis thaliana] GI:15408535;
contains Pfam profile PF02826: D-isomer specific
2-hydroxyacid dehydrogenase, NAD binding domain
Length = 636
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +1
Query: 10 DIKMKLILIVAAF-LAVTFADNVESDKEIEDSEAAE 114
+I+ K I I+ +F L N SD+E+E+SEA+E
Sbjct: 318 EIREKAISILHSFFLDGVIPSNTVSDEEVEESEASE 353
>At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest
subunit (RPB205) (RPII) (RPB1) nearly identical to
P|P18616 DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6) {Arabidopsis thaliana}
Length = 1840
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +3
Query: 195 PAYPVETSKYVERSTQADPAINTYPQNNYAPPQNSYYPQN-TYAPPQNTY 341
P+Y + Y +S + P+I P N P + Y P + Y+P +Y
Sbjct: 1718 PSYGPTSPSYNPQSAKYSPSIAYSPSNARLSPASPYSPTSPNYSPTSPSY 1767
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,435,713
Number of Sequences: 28952
Number of extensions: 197850
Number of successful extensions: 779
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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