Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20600
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c...    27   2.5  
SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces pom...    27   2.5  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    26   5.7  
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces...    25   7.5  
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    25   9.9  
SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr...    25   9.9  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    25   9.9  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    25   9.9  

>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 367

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 174 IKYRPTSEPFQHIQQWLDTSSFNGSSVHAS 85
           ++Y   SE F HI Q+L  SSFN  + ++S
Sbjct: 236 LRYSFISEKFLHIVQFLRISSFNTKNDYSS 265


>SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 341

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = +3

Query: 354 RGFSDKLVQAYYEYMVDIAILLGADKTKATEELKESLQFEMKLANISLPLENVVTQRVST 533
           +G SDK ++A Y  M+ +A     DKT    +++   Q E+ L      +   V  ++S+
Sbjct: 258 KGLSDKFLRAPYGRMLIVAGTDRLDKTLTIGQMQGKYQLEI-LPETGHFVHEDVPAKISS 316

Query: 534 TL*PLLNF-NRNSP 572
               LLNF +RN P
Sbjct: 317 L---LLNFWHRNQP 327


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 512 RNATSLYNPMTIAELQQKFPKVPWLEYINRLL 607
           ++   + + + IA LQQ+FP   W+   +RL+
Sbjct: 691 KSTPEMRHKLRIAALQQRFPVDEWVALYDRLI 722


>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 403

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 327 LGLSREYLNRGFSDKLVQAYYEYMVDIAILLGADKTKATEELK 455
           +GL+R+YLN G  DK ++   + +   A   G D  K  E+ K
Sbjct: 12  IGLARKYLNAGEYDKALKFANKSLRIHATTEGEDFVKQIEKQK 54


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +1

Query: 160 WPVLDGQ--SWDENSFSWEQSVYKF 228
           +P+  GQ  +WD     W+QS++K+
Sbjct: 92  YPIRHGQIENWDHMERFWQQSLFKY 116


>SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = +2

Query: 479 ISQHFV--TSGKRRNATSLYNPMTIAELQQKFPKVPWLEYINRLLAPHITVDVNELTIVS 652
           +S+H+V   +G      S+Y     A L Q  PK+    +   +L PH  V +   T+V 
Sbjct: 196 VSEHYVGVNTGGMDQCASIYGEQNKALLVQFKPKLMATPFKMPVLKPHDMVFLISNTLVE 255

Query: 653 VPKYIT 670
             K  T
Sbjct: 256 ANKQET 261


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 172 DGQSWDENSFSWEQSVYKFRDAGYSVDYSSISL 270
           D +S D  S  W+ +   FR++  S+D++  S+
Sbjct: 201 DIRSSDSKSVGWDDNSTGFRESSKSLDHTDTSM 233


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 176 VSHGTRTHFLGSNRCTNSEMPVTPSIIP 259
           ++H  R H L  N  TN+ + +TP   P
Sbjct: 280 ITHNRRKHKLPLNATTNNSVVLTPDTSP 307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,798,892
Number of Sequences: 5004
Number of extensions: 57293
Number of successful extensions: 183
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)