Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20600
         (671 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320...    32   0.48 
06_03_0061 + 16111250-16111588,16111607-16111738,16112006-161121...    29   3.4  
01_06_0946 + 33220910-33222221,33223373-33223734,33223863-332240...    29   3.4  
09_04_0579 + 18676165-18676524,18676846-18677058,18677136-186772...    29   4.5  
11_06_0310 + 22274762-22275412,22275515-22275725,22276713-222773...    28   5.9  
06_03_0887 + 25688726-25689616,25689759-25690406                       28   7.8  

>04_03_0582 +
           17528335-17529790,17529913-17531651,17531814-17532035,
           17532062-17533525
          Length = 1626

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +3

Query: 177 SVMGRELIFLGAIGVQIQXXXXXXXXXXDFSISVDVKNSTRRVID 311
           S + R+L F G +GV  +          D S+SVDVK+  +R ID
Sbjct: 503 SRLRRKLAFRGFVGVSSEGMSGGLALYWDESVSVDVKDINKRYID 547


>06_03_0061 +
           16111250-16111588,16111607-16111738,16112006-16112170,
           16112278-16112319,16112418-16113179
          Length = 479

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -3

Query: 138 IQQWLDTSSFNGSSVHAS-LVQGFGEHEWS 52
           +QQWL+  S  G ++  S  V G G H WS
Sbjct: 177 VQQWLEFRSCTGLTIQGSGTVDGQGSHWWS 206


>01_06_0946 + 33220910-33222221,33223373-33223734,33223863-33224073,
            33224174-33224411,33224492-33224642,33224733-33224997,
            33231775-33231820,33232167-33232815,33232883-33233384,
            33235023-33235360,33235466-33235676,33235769-33235992,
            33236042-33236115,33236147-33236234,33236316-33236612
          Length = 1655

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 121  VQPLLDMLKRLGGWPVLDGQSWDENSF 201
            V+P  D+L+R   W   +GQSW ENS+
Sbjct: 1070 VEPRRDVLQR--SWSDNNGQSWSENSY 1094


>09_04_0579 +
           18676165-18676524,18676846-18677058,18677136-18677288,
           18677503-18677622,18677696-18677782,18677876-18678313
          Length = 456

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -1

Query: 164 GQPPSRFSISSNGWTPRASMAVL 96
           G PPSR S+SS+  TPR   A L
Sbjct: 14  GGPPSRVSVSSSSSTPRRRCAAL 36


>11_06_0310 +
           22274762-22275412,22275515-22275725,22276713-22277388,
           22277739-22277816,22278228-22278573
          Length = 653

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 154 GGWPVLDGQSWDENSFSWEQSVYKFRDAGYSVD 252
           G  P L G+S+ E +  WE+ V  +R   Y +D
Sbjct: 425 GEVPGLTGESYAEENARWERHVAAYRKVNYRLD 457


>06_03_0887 + 25688726-25689616,25689759-25690406
          Length = 512

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -2

Query: 211 APKKMSSRPMTDHQVQANLRAVSAYPAMVGHLELQWQFCS 92
           A + +S RP+ + +V A LRAV+A  A    +EL+   C+
Sbjct: 145 ARRVLSFRPIREEEVAATLRAVAAAAADGRTVELRAALCA 184


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,970,120
Number of Sequences: 37544
Number of extensions: 365026
Number of successful extensions: 963
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)