Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20600
         (671 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    22   4.6  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   4.6  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    22   4.6  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   8.1  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   8.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   8.1  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   8.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.1  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   8.1  

>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/39 (25%), Positives = 17/39 (43%)
 Frame = +3

Query: 363 SDKLVQAYYEYMVDIAILLGADKTKATEELKESLQFEMK 479
           +D+L   YY+  +D    L  D       + E+ Q + K
Sbjct: 38  NDRLRNQYYDCFIDAGSCLTPDSVFFKSHITEAFQTQCK 76


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -1

Query: 128 GWTPRASMAVLFMQAWYKVLA 66
           GW P    A L +Q W  V A
Sbjct: 572 GWHPSDRSARLMLQPWANVFA 592


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/39 (25%), Positives = 17/39 (43%)
 Frame = +3

Query: 363 SDKLVQAYYEYMVDIAILLGADKTKATEELKESLQFEMK 479
           +D+L   YY+  +D    L  D       + E+ Q + K
Sbjct: 38  NDRLRNQYYDCFIDAGSCLTPDSVFFKSHITEAFQTQCK 76


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/22 (36%), Positives = 9/22 (40%)
 Frame = +1

Query: 154 GGWPVLDGQSWDENSFSWEQSV 219
           GGW    G SW +      Q V
Sbjct: 757 GGWLGQQGNSWSQQQVQQAQQV 778


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 415 SLELIRQRLQKNLKNHCNSK*N 480
           +L L R  L+K   ++CNSK N
Sbjct: 203 NLHLPRFTLEKFFTDYCNSKTN 224


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 415 SLELIRQRLQKNLKNHCNSK*N 480
           +L L R  L+K   ++CNSK N
Sbjct: 203 NLHLPRFTLEKFFTDYCNSKTN 224


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/37 (21%), Positives = 19/37 (51%)
 Frame = -2

Query: 664 VFGYADNGKFINIDRNVWRKQSVDVFQPRNLGEFLLK 554
           + GY  N +   +   ++++ S+     RN+G F+ +
Sbjct: 211 IIGYETNDRKEKLATGIYQRLSLSFKLQRNIGYFVFQ 247


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +1

Query: 1   QEQIRSLLDEPV 36
           QE+IR+LLDE +
Sbjct: 447 QEEIRTLLDESI 458


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +1

Query: 1   QEQIRSLLDEPV 36
           QE+IR+LLDE +
Sbjct: 153 QEEIRTLLDESI 164


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,812
Number of Sequences: 438
Number of extensions: 3761
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)