Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20599
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    24   1.6  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    24   1.6  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   3.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.9  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   4.9  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    22   6.4  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    21   8.5  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 174 DSDLQLERINVYYNEASGGKYVPRAILSTWSPAPWTLSAP 293
           D+ L+   I  Y N+  GG++V   I   W+P  +  + P
Sbjct: 72  DARLKFSNIAPYLNQIYGGQFVRDLI---WTPTVYVSNEP 108


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +2

Query: 395 VDSVLDVVRKESESCDCLQG 454
           +DS+++++R   ++CD L G
Sbjct: 106 IDSIINIIRVRVDACDRLWG 125


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 640 FQLAGELRESHCM 602
           F   G +RESHCM
Sbjct: 68  FGCCGAIRESHCM 80


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 266  APSREDGAGHVLAAGGFIVVY 204
            APSR+ G+GH    GG +  Y
Sbjct: 1922 APSRQTGSGHG-GHGGLLTPY 1941


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +3

Query: 540 QNHEHILSSPLAQSIRHCRRTIQCDSLSSPAS*KHRRNLLHRQRG 674
           Q H+ +++SPL+Q  +   +     +L SP      R+   R+RG
Sbjct: 230 QQHQGVVTSPLSQQQQAAPQGAASANLPSPLY-PWMRSQFERKRG 273


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 15/57 (26%), Positives = 21/57 (36%)
 Frame = +1

Query: 406 PRCSPQRIRILRLPTGLPTYTFPRWRHRVRYGHPLISKIREEYPDRIMNTYSVVPSP 576
           P+  P   R+ R P   P    P +  + R  HP + +  E  P      Y   P P
Sbjct: 107 PQPRPPHPRLRREPEAEPGNNRPVYIPQPRPPHPRLRREPEAEPGNNRPVYIPQPRP 163



 Score = 21.4 bits (43), Expect = 8.5
 Identities = 15/60 (25%), Positives = 23/60 (38%)
 Frame = +1

Query: 400 LGPRCSPQRIRILRLPTGLPTYTFPRWRHRVRYGHPLISKIREEYPDRIMNTYSVVPSPK 579
           L P   P R+R    P   P    P +  + R  HP + +  E   +   N    +P P+
Sbjct: 23  LDPPTRPARLRREAKPEAEPGNNRPIYIPQPRPPHPRLRREAEPKAEPGNNRPIYIPQPR 82


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 15/60 (25%), Positives = 23/60 (38%)
 Frame = +1

Query: 400 LGPRCSPQRIRILRLPTGLPTYTFPRWRHRVRYGHPLISKIREEYPDRIMNTYSVVPSPK 579
           L P   P R+R    P   P    P +  + R  HP + +  E   +   N    +P P+
Sbjct: 22  LDPPTRPTRLRREAKPEAEPGNNRPVYIPQPRPPHPRLRREAEPEAEPGNNRPVYIPQPR 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,506
Number of Sequences: 438
Number of extensions: 3886
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)