Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20598
         (591 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    27   1.5  
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    26   3.6  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    25   6.2  
SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces pombe...    25   8.3  

>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 213 CIVDEIPLAVMDTYAGYTLLSPSRTDLSAAS 305
           C  D+I   V D Y  ++LLSP R+D+S  S
Sbjct: 462 CFRDDI---VADDYTKFSLLSPIRSDMSGIS 489


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = +1

Query: 412 NPVLCSPLLVENVGRRPHQDVVLDLNCPIVEDGASRVVKSYLSTISTRTCTLK 570
           N V C     E V   P  D+ LD+N P ++    R V       S  +C  K
Sbjct: 271 NVVTCLDCKKERVAVDPLMDISLDINEPTLQGCLERFVSKEKVQYSCHSCGSK 323


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 254 VRVHNGERDFINDAVNRVTDVL 189
           V   NG R+++ DAV R  DV+
Sbjct: 499 VESRNGRREYVQDAVRRHGDVI 520


>SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 460

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 6/25 (24%), Positives = 14/25 (56%)
 Frame = +2

Query: 335 PHVEGQDEVKYHKYYQWVCFVLFFQ 409
           P ++  D+ K+H+   W+    +F+
Sbjct: 328 PFIKNNDKTKFHQNIDWIALEKYFE 352


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,538,595
Number of Sequences: 5004
Number of extensions: 52450
Number of successful extensions: 152
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)