Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20598
         (591 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203     29   2.1  
06_03_1130 - 27826384-27827039,27827800-27828031,27828120-278284...    29   2.8  
07_01_0495 + 3722319-3722517,3723325-3723482,3723652-3723929,372...    29   3.7  
01_06_1374 + 36740860-36741365,36742529-36743003,36743084-36743890     29   3.7  
05_01_0091 + 602481-602721,602819-602901,603431-603560,604188-60...    27   8.5  

>02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203
          Length = 740

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
 Frame = -3

Query: 364 FNFVLSFDMWADAGLHVILSD--AADKSVRDGESRVYPAYVSITASGISSTMQSIGSPMY 191
           + FVLS +  AD  L V   +    D SVR G+ R+Y A      +G +S M    +  Y
Sbjct: 33  WTFVLSCNRSADGRLRVYNYEIEVVDVSVRRGQLRIYSAINPWCYNGSTSAMNGQSNWWY 92

Query: 190 CRDVT--RSENAIKIITV 143
              +T  R  +A+   TV
Sbjct: 93  DMSITNFRINDALNRFTV 110


>06_03_1130 - 27826384-27827039,27827800-27828031,27828120-27828491,
            27829243-27829449,27829611-27829704,27829806-27829870,
            27829946-27830398,27830467-27830760,27830837-27831295,
            27831367-27831588,27831755-27831968,27832039-27832494,
            27833280-27833389,27833468-27833644,27833758-27833979,
            27834048-27834167,27834274-27834383,27834552-27834607,
            27835252-27835440,27835602-27835775,27836066-27836281,
            27837066-27837106,27837971-27837986,27838330-27838415,
            27838737-27838910,27839093-27839149,27839720-27840064,
            27840175-27840216,27840377-27840496,27840575-27840724,
            27840830-27841534,27841609-27841954,27842978-27843080,
            27844817-27844860,27845905-27846101,27846322-27846344,
            27846802-27847122,27847406-27847579,27847843-27848047,
            27848817-27848880,27850097-27850278,27850291-27850350,
            27850688-27850748,27851249-27851313,27851491-27851569,
            27851656-27852021,27852442-27852790,27852887-27852989,
            27853103-27853373,27854296-27854405,27854515-27854652
          Length = 3364

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 558  SSCGNSRQVAFYDPTCTVFNDGTVKIQDHILMRPPSHVF 442
            SS GN      YD T  +++    +  DH++M  P H+F
Sbjct: 3148 SSRGNVVATGSYDTTVMIWHAFRGRPSDHVVMERPVHIF 3186


>07_01_0495 +
           3722319-3722517,3723325-3723482,3723652-3723929,
           3723946-3724474
          Length = 387

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +1

Query: 367 SQILSVGLFCVILSSNPVLCSPLLVENVGRRPHQDVVLDLNCPIVEDGA 513
           S + ++ L C   S+N    +P    ++GR P  D+ LD+   I  + A
Sbjct: 221 SLVAALKLKCPCWSTNSSQITPSTTTSMGRTPKADIPLDIRLQIAAESA 269


>01_06_1374 + 36740860-36741365,36742529-36743003,36743084-36743890
          Length = 595

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -3

Query: 361 NFVLSFDMWA-DAGLHVILSDAADKSVRDGESRV 263
           N  LSFD W  D  LH+++    D   R+  SRV
Sbjct: 12  NRALSFDDWVPDEALHLVMGHVEDPRDREAASRV 45


>05_01_0091 +
           602481-602721,602819-602901,603431-603560,604188-604267,
           604353-604442,605019-605143,605702-605762,605839-605889,
           605976-606053,606136-606241,606333-606478,607054-607176
          Length = 437

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 115 LSMHTESSLRSPFTEPKTSNMAGARRVGRGREYG 14
           LS++  S  R+P T   +SN+ G   V R +E G
Sbjct: 46  LSLYASSLPRAPTTPSSSSNLVGLTLVRRAKEKG 79


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,057,062
Number of Sequences: 37544
Number of extensions: 362342
Number of successful extensions: 1081
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)