Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20598
         (591 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06)                32   0.30 
SB_25753| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.93 
SB_5795| Best HMM Match : RasGEF (HMM E-Value=5.3e-06)                 31   0.93 
SB_30471| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30)           29   3.8  
SB_29260| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_39796| Best HMM Match : VWA (HMM E-Value=0)                         28   6.6  

>SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06)
          Length = 739

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 230 DFINDAVNRVTDVLSRRDEKRERDQDNHGGFV 135
           D IND  N++ +++S R+  +     NHGG+V
Sbjct: 534 DTINDERNKINEIISNRNPGKRVQVTNHGGYV 565


>SB_25753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 537

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = -3

Query: 271 SRVYPAYVSITASGISSTMQSIG--SPMYCRDVTRSENAIK 155
           +R Y  Y ++  SG  + ++S+G   P + R VT S+NA++
Sbjct: 131 TRAYERYKTVLVSGTVNPLESLGIFPPDFSRPVTLSQNAVR 171


>SB_5795| Best HMM Match : RasGEF (HMM E-Value=5.3e-06)
          Length = 155

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 436 VAGNIKQDCLKE*HKTNPLIIFVIFNFVLS 347
           V G +  +C+KE   T+PL++FV  N  +S
Sbjct: 115 VEGKVHSECIKECRSTSPLLLFVTENATVS 144


>SB_30471| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 316

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/61 (22%), Positives = 29/61 (47%)
 Frame = +3

Query: 147 VIILIAFSLLVTSRQYIGDPIDCIVDEIPLAVMDTYAGYTLLSPSRTDLSAASERITCNP 326
           V+I+   +LL+T  Q    P++     + +A++DT        P +T  ++    +  +P
Sbjct: 4   VLIITLLALLITKLQVTASPVEIAHGRVHMAILDTQNFVCQTEPFQTPFTSDDIAVHLSP 63

Query: 327 A 329
           A
Sbjct: 64  A 64


>SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30)
          Length = 3015

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +2

Query: 386  VCFVLFFQAILFYVPRYLWKTWEGGR---IKMWSWILTVPSLKTVQV 517
            VC +LF    ++YV + + + ++GG+    + W+W+  + S+    V
Sbjct: 2368 VCVLLFMLLTVYYVVQEMRQVYKGGKGYFKEPWNWVELLQSISAASV 2414


>SB_29260| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 804

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +3

Query: 288 DLSAASERITCNPASAHMSKDKTKLNITNIISGFVLCYSFK 410
           ++S    ++  +  +A  S+D+  L ITNIIS F+L  SF+
Sbjct: 457 EVSKLERKLMKDVGTALHSRDEFSLLITNIISSFLLGKSFE 497


>SB_39796| Best HMM Match : VWA (HMM E-Value=0)
          Length = 2119

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 254 RWIYSTFTIPNRLIGRVXKD 313
           RW  ++ TIP+RL GRV K+
Sbjct: 389 RWSVTSMTIPDRLQGRVSKE 408


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,935,488
Number of Sequences: 59808
Number of extensions: 425966
Number of successful extensions: 1167
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)