Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20598
         (591 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    24   3.2  
AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced ...    24   4.2  
AY973196-1|AAY41590.1|   94|Anopheles gambiae defensin 4 protein.      23   5.6  

>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 24.2 bits (50), Expect = 3.2
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = +3

Query: 216 IVDEIPLAVMDTYAGYTLLSPSRTDLSAASERITCNPASAHMSKDKT 356
           ++D++PL   D     + +SP   +L +A+     NPA+ + + + T
Sbjct: 448 LMDDMPLPYHDHNHHNSPMSPINFNLLSAASTAVPNPAATNATANST 494


>AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced
           homeotic protein protein.
          Length = 372

 Score = 23.8 bits (49), Expect = 4.2
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = +3

Query: 432 ATCGKRGK-EAASRCGPGS*LSHR*RRCKSGRKKLLVDYFHTNLHTQN 572
           A  G  G+ E + +  PGS +    R  KSG     V    TN +T N
Sbjct: 164 ANDGNNGRPEISPKLSPGSVVESVSRSLKSGNPSTAVSSSSTNNNTSN 211


>AY973196-1|AAY41590.1|   94|Anopheles gambiae defensin 4 protein.
          Length = 94

 Score = 23.4 bits (48), Expect = 5.6
 Identities = 13/56 (23%), Positives = 26/56 (46%)
 Frame = +1

Query: 397 VILSSNPVLCSPLLVENVGRRPHQDVVLDLNCPIVEDGASRVVKSYLSTISTRTCT 564
           +++S+     +PL   +   RPH       + P+V    S +V++   T +  TC+
Sbjct: 18  LLVSTEMTFANPLSPNSPAERPHIQPFQMASAPLVAQSRSAMVQTL--TCTNPTCS 71


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 651,772
Number of Sequences: 2352
Number of extensions: 13778
Number of successful extensions: 19
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 56768445
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)