Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20598
         (591 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07727.1 68415.m00977 cytochrome b (MTCYB) (COB) (CYTB) conta...    29   2.3  
At3g55270.1 68416.m06138 MAP kinase phosphatase (MKP1) identical...    29   3.1  
At5g51540.1 68418.m06391 peptidase M3 family protein / thimet ol...    27   7.1  
At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase fa...    27   7.1  
At5g42450.1 68418.m05168 pentatricopeptide (PPR) repeat-containi...    27   9.4  
At3g13740.1 68416.m01734 URF 4-related similar to URF 4 (GI:4922...    27   9.4  

>At2g07727.1 68415.m00977 cytochrome b (MTCYB) (COB) (CYTB) contains
           Pfam profile PF00033: Cytochrome b(N-terminal)/b6/petB;
           ontains Pfam profile PF00032: Cytochrome
           b(C-terminal)/b6/petD; 99% identical to  apocytochrome B
           (GI:6851014), cytochrome b (GI:402962), and Cytochrome b
           (Swiss-Prot:P42792) [Arabidopsis thaliana]
          Length = 393

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
 Frame = +2

Query: 329 VGPHVEGQDEVKYHKYYQ------WVCFVLFFQAILFYVPRYL 439
           +G H E  D++ ++ Y+       WV F +FF   +FY P  L
Sbjct: 216 LGVHSE-MDKIAFYPYFYVKDLVGWVAFAIFFSIWIFYAPNVL 257


>At3g55270.1 68416.m06138 MAP kinase phosphatase (MKP1) identical to
           MAP kinase phosphatase (MKP1) GI:13540262 from
           [Arabidopsis thaliana]
          Length = 534

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = +3

Query: 3   RSARPYSRPRPTRRA-PAMFDVFGSVKGLLKLDSVCIDNN---VFRLH 134
           R    + +P P R+A P++ +  GS+KG LKL  +   N     F LH
Sbjct: 313 RGVNTFLQPSPNRKASPSLAERRGSLKGSLKLPGLADSNRGTPAFTLH 360


>At5g51540.1 68418.m06391 peptidase M3 family protein / thimet
           oligopeptidase family protein low similarity to
           SP|Q99797 Mitochondrial intermediate peptidase,
           mitochondrial precursor (EC 3.4.24.59) {Homo sapiens};
           contains Pfam profile PF01432: Peptidase family M3
          Length = 860

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/58 (24%), Positives = 29/58 (50%)
 Frame = +3

Query: 39  RRAPAMFDVFGSVKGLLKLDSVCIDNNVFRLHYKATVIILIAFSLLVTSRQYIGDPID 212
           RRAP    VF S +G  K +    + N F L +    I+++   +++ +  ++ + +D
Sbjct: 763 RRAPVEKPVFMSEEGAAKAEEQRQNENAFLLTWLGLGIVILIEGIILAASGFLPEELD 820


>At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase
           family protein belongs to Pfam:PF03372:
           Endonuclease/Exonuclease/phosphatase family; contains 3
           WD-40 repeats (PF00400);similar to Type II
           inositol-1,4,5-trisphosphate 5-phosphatase EC 3.1.3.56
           (5PTASE) (INPP5B) (SP:P32019) [Homo sapiens]
          Length = 1305

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 437 LWKTWEGGRIKMWSW 481
           LW   EGG IK+W+W
Sbjct: 280 LWSCSEGGVIKIWTW 294


>At5g42450.1 68418.m05168 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 396

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/31 (32%), Positives = 22/31 (70%)
 Frame = +3

Query: 342 SKDKTKLNITNIISGFVLCYSFKQSCFMFPA 434
           ++D   ++ITN+ISG++  + F+++  +F A
Sbjct: 33  TRDPNVVSITNLISGYLKKHEFEEALSLFRA 63


>At3g13740.1 68416.m01734 URF 4-related similar to URF 4 (GI:49224)
           (Swiss-Prot:Q05370)[Synechococcus sp.]
          Length = 247

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 17/36 (47%), Positives = 18/36 (50%)
 Frame = +3

Query: 225 EIPLAVMDTYAGYTLLSPSRTDLSAASERITCNPAS 332
           EI + V DTY GY   SPS   L     R   NPAS
Sbjct: 66  EITVDVDDTYMGYETWSPSPPKLE--KPRSVFNPAS 99


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,513,807
Number of Sequences: 28952
Number of extensions: 286116
Number of successful extensions: 863
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)