Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20595
(668 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 121 1e-28
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 121 1e-28
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 121 1e-28
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 40 4e-04
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 32 0.086
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 27 3.2
SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos... 25 7.5
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 9.9
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 25 9.9
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 121 bits (291), Expect = 1e-28
Identities = 53/72 (73%), Positives = 60/72 (83%)
Frame = +1
Query: 37 KTTPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEV 216
K PP G A FTAQVI+LNHPGQIS GY+PVLDCHTAHIACKFAE+ EK+DRR+GK E
Sbjct: 328 KNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEE 387
Query: 217 NPKSIKSGDAAI 252
+PK +KSGDA I
Sbjct: 388 SPKFVKSGDACI 399
Score = 80.2 bits (189), Expect = 2e-16
Identities = 53/127 (41%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
Frame = +3
Query: 3 ELRRGYVAGDSKNNPT*GCCRFYSS----SHCA*PSWSNLKRLHTSIGLPHCPHCLQICR 170
++RRG V GDSKN+P GC F + +H S L C I +
Sbjct: 317 DIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIACKFAELIEK 376
Query: 171 NQRKS*PSYW*IY*SQPKIHQVWRCSHCNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVA 350
R+S PK + +VPSKP+CVE+F ++ PLGRFAVRDMRQTVA
Sbjct: 377 IDRRSGKKIE----ESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVA 432
Query: 351 VGVIKAV 371
VGVIKAV
Sbjct: 433 VGVIKAV 439
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 121 bits (291), Expect = 1e-28
Identities = 53/72 (73%), Positives = 60/72 (83%)
Frame = +1
Query: 37 KTTPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEV 216
K PP G A FTAQVI+LNHPGQIS GY+PVLDCHTAHIACKFAE+ EK+DRR+GK E
Sbjct: 328 KNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEE 387
Query: 217 NPKSIKSGDAAI 252
+PK +KSGDA I
Sbjct: 388 SPKFVKSGDACI 399
Score = 80.2 bits (189), Expect = 2e-16
Identities = 53/127 (41%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
Frame = +3
Query: 3 ELRRGYVAGDSKNNPT*GCCRFYSS----SHCA*PSWSNLKRLHTSIGLPHCPHCLQICR 170
++RRG V GDSKN+P GC F + +H S L C I +
Sbjct: 317 DIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIACKFAELIEK 376
Query: 171 NQRKS*PSYW*IY*SQPKIHQVWRCSHCNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVA 350
R+S PK + +VPSKP+CVE+F ++ PLGRFAVRDMRQTVA
Sbjct: 377 IDRRSGKKIE----ESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVA 432
Query: 351 VGVIKAV 371
VGVIKAV
Sbjct: 433 VGVIKAV 439
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 121 bits (291), Expect = 1e-28
Identities = 53/72 (73%), Positives = 60/72 (83%)
Frame = +1
Query: 37 KTTPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEV 216
K PP G A FTAQVI+LNHPGQIS GY+PVLDCHTAHIACKFAE+ EK+DRR+GK E
Sbjct: 328 KNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEE 387
Query: 217 NPKSIKSGDAAI 252
+PK +KSGDA I
Sbjct: 388 SPKFVKSGDACI 399
Score = 80.2 bits (189), Expect = 2e-16
Identities = 53/127 (41%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
Frame = +3
Query: 3 ELRRGYVAGDSKNNPT*GCCRFYSS----SHCA*PSWSNLKRLHTSIGLPHCPHCLQICR 170
++RRG V GDSKN+P GC F + +H S L C I +
Sbjct: 317 DIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIACKFAELIEK 376
Query: 171 NQRKS*PSYW*IY*SQPKIHQVWRCSHCNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVA 350
R+S PK + +VPSKP+CVE+F ++ PLGRFAVRDMRQTVA
Sbjct: 377 IDRRSGKKIE----ESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVA 432
Query: 351 VGVIKAV 371
VGVIKAV
Sbjct: 433 VGVIKAV 439
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 39.5 bits (88), Expect = 4e-04
Identities = 19/61 (31%), Positives = 31/61 (50%)
Frame = +1
Query: 25 LVTPKTTPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGK 204
++T P F AQ+ +L P ++ GY+ V+ HTA FA++ K+D+ K
Sbjct: 546 VLTSTKNPVHATTRFIAQIAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLDKTNRK 605
Query: 205 S 207
S
Sbjct: 606 S 606
Score = 37.9 bits (84), Expect = 0.001
Identities = 16/35 (45%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
Frame = +3
Query: 273 PLCVESFQEFPPLGRFAVRDMRQTVAVG-VIKAVN 374
P+C+E F+++ +GRF +RD TVAVG V+K ++
Sbjct: 628 PVCMERFEDYQYMGRFTLRDQGTTVAVGKVVKILD 662
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 31.9 bits (69), Expect = 0.086
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +3
Query: 273 PLCVESFQEFPPLGRFAVRDMRQTVAVGVIK 365
PLC+ +E P LGRF +R TVA G++K
Sbjct: 561 PLCLA--EECPALGRFILRRSGDTVAAGIVK 589
>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 312
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 463 FSYNCDTSFTERCFEEKRATNSFLFYIFYKACNVTL 570
F + C + CF ++ FLFY F AC V +
Sbjct: 139 FDHYCSFVGKDVCFSNQKFFYQFLFYGFSAACMVLI 174
>SPAC631.01c |acp2||F-actin capping protein beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 268
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -1
Query: 251 MAASPDLMDFGLTSVDLPVRRSTFS 177
++ +PDL D L+SVD P++ +T S
Sbjct: 27 LSVAPDLADVLLSSVDQPLKVNTCS 51
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = -2
Query: 430 PLVAFSAALVTLPPPASLKLTALMTPTATVCLMSRTA 320
P + ++ T+PP S+ T + PT ++ + TA
Sbjct: 73 PSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTA 109
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -2
Query: 403 VTLPPPASLKLTALMTPTATVCLMSRTAKRPRGGNSWKDST 281
+ L P +S + TP+AT S+ + P GG D+T
Sbjct: 244 LNLKPRSSSNVNTEATPSATTTTSSKPKRDPFGGAKPVDNT 284
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,684,125
Number of Sequences: 5004
Number of extensions: 53859
Number of successful extensions: 158
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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