Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20595
(668 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 114 5e-26
SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015) 37 0.013
SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26) 29 3.4
SB_43115| Best HMM Match : SapB_1 (HMM E-Value=3.9) 29 3.4
SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_18954| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0015) 29 3.4
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 29 3.4
SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25) 28 6.0
SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 114 bits (275), Expect = 5e-26
Identities = 50/73 (68%), Positives = 59/73 (80%)
Frame = +1
Query: 37 KTTPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEV 216
K PPK FTAQVIV+NHPG+I GY+PVLDCHTAHIACKF ++ EK+DRR+GK E
Sbjct: 189 KNNPPKPCKSFTAQVIVMNHPGEIHAGYSPVLDCHTAHIACKFDKLLEKIDRRSGKKLED 248
Query: 217 NPKSIKSGDAAIV 255
NPK IK+GDAA+V
Sbjct: 249 NPKMIKTGDAAMV 261
Score = 78.2 bits (184), Expect = 6e-15
Identities = 52/130 (40%), Positives = 73/130 (56%), Gaps = 6/130 (4%)
Frame = +3
Query: 3 ELRRGYVAGDSKNNPT*GCCRFYSS----SHCA*--PSWSNLKRLHTSIGLPHCPHCLQI 164
+++RG VAGD KNNP C F + +H +S + HT+ C +
Sbjct: 178 DIKRGNVAGDFKNNPPKPCKSFTAQVIVMNHPGEIHAGYSPVLDCHTAHIA--CKFDKLL 235
Query: 165 CRNQRKS*PSYW*IY*SQPKIHQVWRCSHCNLVPSKPLCVESFQEFPPLGRFAVRDMRQT 344
+ R+S PK+ + + ++PSKP+CVE+F EFPPLGRFAVRDM+QT
Sbjct: 236 EKIDRRSGKKLE----DNPKMIKTGDAAMVEMIPSKPMCVETFTEFPPLGRFAVRDMKQT 291
Query: 345 VAVGVIKAVN 374
VAVGVIK+V+
Sbjct: 292 VAVGVIKSVD 301
>SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015)
Length = 80
Score = 37.1 bits (82), Expect = 0.013
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = +3
Query: 258 LVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 362
L S+P+CVE ++++ LGRF +R T+A GVI
Sbjct: 44 LQTSRPVCVELYKDYKDLGRFMLRYGGNTIAAGVI 78
>SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)
Length = 903
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 255 NLVPSKPLCVESFQEFPPLGRFAVRDMRQ 341
++VP++P CV SF EF + +RD+ Q
Sbjct: 381 SVVPAQPQCVASFPEFCAVSVSYIRDLSQ 409
>SB_43115| Best HMM Match : SapB_1 (HMM E-Value=3.9)
Length = 495
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 373 LTALMTPTATVCLMSRTAKRPRGGNSWKDSTHR 275
LT+L PT L RT +PR G W+ + H+
Sbjct: 409 LTSLNEPTGEDLLFGRTLWKPRFGYLWQSAIHQ 441
>SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3367
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = -1
Query: 236 DLMDF--GLTSVDLPVRRSTFSL-ISANLQAMWAVWQS 132
DL +F G+T++ LP ST + NLQ W +WQS
Sbjct: 2456 DLGNFIKGITTIPLPSSSSTPIIDFEVNLQGEWILWQS 2493
>SB_18954| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0015)
Length = 921
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Frame = +1
Query: 448 C*QHNFSYNCDTSFTERCFEEKRATNSFLFYIFYKACNVTLFYNL-YKVIHNISETFCYD 624
C N + D + C K + Y KAC L Y+ + H E +C++
Sbjct: 250 CGSCNRIFAGDECYERHCVPNKEGNSICSKYYRCKACKKVLAYSKRHPRDHKCGEVYCFN 309
Query: 625 CK 630
CK
Sbjct: 310 CK 311
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 29.1 bits (62), Expect = 3.4
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 276 LCVESFQEFPPLGRFAVRD 332
+C+E F +F +GRF +RD
Sbjct: 527 ICIEKFSDFQQMGRFTLRD 545
>SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25)
Length = 1097
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 358 TPTATVCLMSRTAKRPRGGNSWKDSTHRGLEG 263
TP+ VCL+SR + PR W R + G
Sbjct: 282 TPSLYVCLLSRAHRDPRLSTGWSPYEKREVRG 313
>SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1081
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 2/92 (2%)
Frame = +1
Query: 1 RNCVVVMLLVTPK--TTPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEI 174
RNC+ +LL + + P + + G +P L + + E+
Sbjct: 392 RNCIFFLLLFEVRVFSVVPSCLREINKDAFEREKESKNQQGDSPDLSSEYEDLKLEMDEL 451
Query: 175 KEKVDRRTGKSTEVNPKSIKSGDAAIVTWYLP 270
K ++ R T +++ +N + G+A V LP
Sbjct: 452 KLRMGRETCRASCINESANARGEAVCVLGALP 483
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,246,597
Number of Sequences: 59808
Number of extensions: 417340
Number of successful extensions: 1222
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1222
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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