Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20594
         (700 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   0.79 
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    24   1.4  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   4.2  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = -1

Query: 697 MHILV*LSVIAANRAVALFCSSKILFILSIVCLLIIALLFCS 572
           +H+L+ + +        LFC + I+F + ++ LL I   +C+
Sbjct: 250 VHLLLLVCIYYFYYMHLLFCCAFIIFTMHLLFLLCIYYFYCA 291


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -2

Query: 558 FLIHLNCHFHENPSVAVFPFMVFHVSALTLFAILLKAFVHY 436
           FL  L     ENP+  ++   V    A+T F+  + A V+Y
Sbjct: 16  FLKALTVWHVENPTYRLYKIFVVFSFAVTFFSAWICALVNY 56


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -1

Query: 628 ILFILSIVCLLIIALLFC 575
           I+F+  I+ L+I+ +L+C
Sbjct: 241 IIFLFFIIPLIILLILYC 258


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,071
Number of Sequences: 336
Number of extensions: 3360
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)