Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20594
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 31 0.21
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 28 1.1
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 28 1.5
SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb... 27 2.0
SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr 3|||... 27 2.0
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 27 3.4
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 27 3.4
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 27 3.4
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 27 3.4
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 27 3.4
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 27 3.4
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 27 3.4
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 27 3.4
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 27 3.4
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 27 3.4
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 27 3.4
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch... 26 4.5
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 26 4.5
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz... 26 6.0
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces... 25 7.9
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 30.7 bits (66), Expect = 0.21
Identities = 20/70 (28%), Positives = 38/70 (54%)
Frame = +2
Query: 53 SSYDSYNDRLGEILNRSITSKMRDSSIDETLAGFGKLRISALTKAVELSPLVKEATIGPN 232
SSY S DRL L+R +TS +R +SID +A L+ + + +++ L + E P+
Sbjct: 568 SSYTSLMDRLINNLSRGLTS-LRAASIDLIIALCKSLQKNEVLQSLSLVKKLSELPFDPS 626
Query: 233 SPAKKELIMK 262
+ ++++
Sbjct: 627 TSRDASVLLR 636
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +1
Query: 361 EAQLHQLSVEFFRKSFEQMICKRAEIMNKCFQKYSEQRERRDMKYHKRK 507
+A+ +L VE K+ + + + A+I N+ + K E +E+R+ + KRK
Sbjct: 492 QARRRRLEVE---KTEPKKLARPAKIKNEAWSKQKEVKEKRNTRREKRK 537
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 27.9 bits (59), Expect = 1.5
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = +2
Query: 47 KNSSYDSYNDRLGEILNRSITSKMRDSSID---ETLAGFGKLRISALTKAVELSPLVKEA 217
K + +++ N +G + SI S MR D E L GF L S ++V LSP+
Sbjct: 139 KENIFNAPNIIIGPRSDFSINSVMRSILCDITAELLEGFSSLEFSIHARSVILSPITDMP 198
Query: 218 TIGP 229
+ P
Sbjct: 199 HLAP 202
>SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 323
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = +1
Query: 328 DLGYNLIMKECEAQLHQLSVEFFRKSFEQMICKRAEIMNKCFQKYSEQRERRDMKY 495
D YNL A+ ++ ++ + +S + + + E + +KY E+R+R+ MKY
Sbjct: 8 DNDYNLPPPNDSAEDLKIFIKRYERSVDSTLLEIDENKREALEKYIEERDRK-MKY 62
>SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 247
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = +1
Query: 328 DLGYNLIMKECEAQLHQLSVEFFRKSFEQMICKRAEIMNKCFQKYSEQRERRDMKY 495
D YNL A+ ++ ++ + +S + + + E + +KY E+R+R+ MKY
Sbjct: 8 DNDYNLPPPNDSAEDLKIFIKRYERSVDSTLLEIDENKREALEKYIEERDRK-MKY 62
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.4
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +1
Query: 307 VEDKLRGDLGYNLIMKECEAQLHQLSVEFFRKSF-EQMICKRAEIMNKCFQKYSEQRERR 483
V+D L+ NLI+ + + + HQ V+F E+ E ++K Q + + + R+
Sbjct: 582 VKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQ-WKQPKNRK 640
Query: 484 DMKYHKRKHSYRRIFMKMT 540
+++ +Y R F+ T
Sbjct: 641 ELRQFLGSVNYLRKFIPKT 659
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.4
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +1
Query: 307 VEDKLRGDLGYNLIMKECEAQLHQLSVEFFRKSF-EQMICKRAEIMNKCFQKYSEQRERR 483
V+D L+ NLI+ + + + HQ V+F E+ E ++K Q + + + R+
Sbjct: 582 VKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQ-WKQPKNRK 640
Query: 484 DMKYHKRKHSYRRIFMKMT 540
+++ +Y R F+ T
Sbjct: 641 ELRQFLGSVNYLRKFIPKT 659
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.4
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +1
Query: 307 VEDKLRGDLGYNLIMKECEAQLHQLSVEFFRKSF-EQMICKRAEIMNKCFQKYSEQRERR 483
V+D L+ NLI+ + + + HQ V+F E+ E ++K Q + + + R+
Sbjct: 582 VKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQ-WKQPKNRK 640
Query: 484 DMKYHKRKHSYRRIFMKMT 540
+++ +Y R F+ T
Sbjct: 641 ELRQFLGSVNYLRKFIPKT 659
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.4
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +1
Query: 307 VEDKLRGDLGYNLIMKECEAQLHQLSVEFFRKSF-EQMICKRAEIMNKCFQKYSEQRERR 483
V+D L+ NLI+ + + + HQ V+F E+ E ++K Q + + + R+
Sbjct: 582 VKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQ-WKQPKNRK 640
Query: 484 DMKYHKRKHSYRRIFMKMT 540
+++ +Y R F+ T
Sbjct: 641 ELRQFLGSVNYLRKFIPKT 659
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.4
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +1
Query: 307 VEDKLRGDLGYNLIMKECEAQLHQLSVEFFRKSF-EQMICKRAEIMNKCFQKYSEQRERR 483
V+D L+ NLI+ + + + HQ V+F E+ E ++K Q + + + R+
Sbjct: 582 VKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQ-WKQPKNRK 640
Query: 484 DMKYHKRKHSYRRIFMKMT 540
+++ +Y R F+ T
Sbjct: 641 ELRQFLGSVNYLRKFIPKT 659
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.4
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +1
Query: 307 VEDKLRGDLGYNLIMKECEAQLHQLSVEFFRKSF-EQMICKRAEIMNKCFQKYSEQRERR 483
V+D L+ NLI+ + + + HQ V+F E+ E ++K Q + + + R+
Sbjct: 582 VKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQ-WKQPKNRK 640
Query: 484 DMKYHKRKHSYRRIFMKMT 540
+++ +Y R F+ T
Sbjct: 641 ELRQFLGSVNYLRKFIPKT 659
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.4
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +1
Query: 307 VEDKLRGDLGYNLIMKECEAQLHQLSVEFFRKSF-EQMICKRAEIMNKCFQKYSEQRERR 483
V+D L+ NLI+ + + + HQ V+F E+ E ++K Q + + + R+
Sbjct: 582 VKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQ-WKQPKNRK 640
Query: 484 DMKYHKRKHSYRRIFMKMT 540
+++ +Y R F+ T
Sbjct: 641 ELRQFLGSVNYLRKFIPKT 659
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.4
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +1
Query: 307 VEDKLRGDLGYNLIMKECEAQLHQLSVEFFRKSF-EQMICKRAEIMNKCFQKYSEQRERR 483
V+D L+ NLI+ + + + HQ V+F E+ E ++K Q + + + R+
Sbjct: 582 VKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQ-WKQPKNRK 640
Query: 484 DMKYHKRKHSYRRIFMKMT 540
+++ +Y R F+ T
Sbjct: 641 ELRQFLGSVNYLRKFIPKT 659
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.4
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +1
Query: 307 VEDKLRGDLGYNLIMKECEAQLHQLSVEFFRKSF-EQMICKRAEIMNKCFQKYSEQRERR 483
V+D L+ NLI+ + + + HQ V+F E+ E ++K Q + + + R+
Sbjct: 582 VKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQ-WKQPKNRK 640
Query: 484 DMKYHKRKHSYRRIFMKMT 540
+++ +Y R F+ T
Sbjct: 641 ELRQFLGSVNYLRKFIPKT 659
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.4
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +1
Query: 307 VEDKLRGDLGYNLIMKECEAQLHQLSVEFFRKSF-EQMICKRAEIMNKCFQKYSEQRERR 483
V+D L+ NLI+ + + + HQ V+F E+ E ++K Q + + + R+
Sbjct: 582 VKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQ-WKQPKNRK 640
Query: 484 DMKYHKRKHSYRRIFMKMT 540
+++ +Y R F+ T
Sbjct: 641 ELRQFLGSVNYLRKFIPKT 659
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.4
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +1
Query: 307 VEDKLRGDLGYNLIMKECEAQLHQLSVEFFRKSF-EQMICKRAEIMNKCFQKYSEQRERR 483
V+D L+ NLI+ + + + HQ V+F E+ E ++K Q + + + R+
Sbjct: 582 VKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQ-WKQPKNRK 640
Query: 484 DMKYHKRKHSYRRIFMKMT 540
+++ +Y R F+ T
Sbjct: 641 ELRQFLGSVNYLRKFIPKT 659
>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 775
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = -2
Query: 186 ALVRADILNLPNPAKVSSILESLI 115
ALV+ D+ L N +K+S++LES I
Sbjct: 536 ALVKDDVETLCNSSKISALLESSI 559
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 26.2 bits (55), Expect = 4.5
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = +1
Query: 244 ERINYEE-KQIPAKIEPLPEDLVEDKLRGDLGYNLIMKECEAQLHQLSVEFFRKSFEQMI 420
E I+ EE +I + P D+ E+K + +L + Q Q + ++ E++
Sbjct: 9 ESISIEETNRIRISLGLKPLDISEEKPQKELSDASVKSSYVDQEQQAYENWKKQEQEEIN 68
Query: 421 CKRAEIMNKCFQKYSEQRERR 483
K+ E + F+K ++ ERR
Sbjct: 69 RKKEEELKSKFEKLRQKNERR 89
>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 409 EQMICKRAEIMNKCFQKYSEQRERRDMKYHKRK 507
E +I K E++ + +KY E+R R + KRK
Sbjct: 236 EIIIEKDPELLKRQAEKYEEERSRARRRLEKRK 268
>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 179 TKAVELSPLVKEATIGPNSPAKKELIMKKNKSPPK 283
T V + P+ ++ + +SP KK+ NKSP K
Sbjct: 47 TDHVNVLPISQDKEMDISSPVKKQKASYSNKSPNK 81
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,727,498
Number of Sequences: 5004
Number of extensions: 55215
Number of successful extensions: 206
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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