Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20594
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0450 - 17701404-17701733,17702777-17702826,17703370-17703376     28   6.2  
08_02_1553 + 27835320-27835364,27836853-27836966,27837062-278374...    28   8.2  
05_01_0120 - 828834-831143                                             28   8.2  

>09_04_0450 - 17701404-17701733,17702777-17702826,17703370-17703376
          Length = 128

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 318 LIFNKVLWQRFNFGGDLFFFIINSFFAGLL 229
           L+FN VLW+ F  G     F +++  AG++
Sbjct: 39  LVFNAVLWEFFFVGAVGVIFCVHTLLAGII 68


>08_02_1553 +
           27835320-27835364,27836853-27836966,27837062-27837457,
           27837751-27837822,27837957-27838082,27838164-27838244,
           27838364-27838558,27839018-27840013
          Length = 674

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 504 PFMVFHVSALTLFAILLKAFVHYFRPF 424
           P   F + A+T+F +L+ AF  +F PF
Sbjct: 10  PAHTFQIIAITVFFLLVVAFYAFFAPF 36


>05_01_0120 - 828834-831143
          Length = 769

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +2

Query: 41  STKNSSYDSYNDRLGEILNRSITSKMRDSSIDETLAGFGKLRISALTKAVELSPLV 208
           S+++  + S N+   +    SI S  + SSI E   GF  L++ +  K + L P V
Sbjct: 552 SSRSPLHQSSNEEPSKSGLGSIRSPSKTSSIAERRGGFSSLKLPSFQKDLVLPPRV 607


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,181,078
Number of Sequences: 37544
Number of extensions: 302674
Number of successful extensions: 870
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)