Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20594
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48241-4|CAA88284.1|  468|Caenorhabditis elegans Hypothetical pr...    32   0.34 
Z48241-3|CAC42265.1|  490|Caenorhabditis elegans Hypothetical pr...    32   0.34 
AF241847-1|AAF71523.1|  468|Caenorhabditis elegans LAG-3B protein.     32   0.34 
AF241846-1|AAF71522.1|  490|Caenorhabditis elegans LAG-3A protein.     32   0.34 
Z81456-1|CAB03810.1|  548|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U53340-3|AAA96208.1|  578|Caenorhabditis elegans Hypothetical pr...    28   5.6  
U41007-21|AAK84502.1|  465|Caenorhabditis elegans Hypothetical p...    28   5.6  
U41007-20|AAA82275.1|  455|Caenorhabditis elegans Hypothetical p...    28   5.6  
AF036692-8|AAB88329.1|  162|Caenorhabditis elegans Hypothetical ...    28   5.6  
AF077536-1|AAK31411.2|  643|Caenorhabditis elegans Hypothetical ...    28   7.4  
X91803-1|CAA62913.1|  880|Caenorhabditis elegans sodium-calcium ...    27   9.8  
AL132858-14|CAJ90511.1|  873|Caenorhabditis elegans Hypothetical...    27   9.8  
AL132858-13|CAB60477.1|  880|Caenorhabditis elegans Hypothetical...    27   9.8  

>Z48241-4|CAA88284.1|  468|Caenorhabditis elegans Hypothetical
           protein C32A3.1b protein.
          Length = 468

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 22/85 (25%), Positives = 38/85 (44%)
 Frame = +1

Query: 259 EEKQIPAKIEPLPEDLVEDKLRGDLGYNLIMKECEAQLHQLSVEFFRKSFEQMICKRAEI 438
           EE   P   + LP    E  + GDL      +E   Q  +L+   + K+  +MI  +  +
Sbjct: 15  EEPTAPFVNDNLPNPEDEPTI-GDLNAFHSGEELHRQRSELARANYEKARPEMIANQRAV 73

Query: 439 MNKCFQKYSEQRERRDMKYHKRKHS 513
               F +Y+E  ER+ ++  K K +
Sbjct: 74  TAHLFNRYTEDEERKRVEQQKNKEA 98


>Z48241-3|CAC42265.1|  490|Caenorhabditis elegans Hypothetical
           protein C32A3.1a protein.
          Length = 490

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 22/85 (25%), Positives = 38/85 (44%)
 Frame = +1

Query: 259 EEKQIPAKIEPLPEDLVEDKLRGDLGYNLIMKECEAQLHQLSVEFFRKSFEQMICKRAEI 438
           EE   P   + LP    E  + GDL      +E   Q  +L+   + K+  +MI  +  +
Sbjct: 37  EEPTAPFVNDNLPNPEDEPTI-GDLNAFHSGEELHRQRSELARANYEKARPEMIANQRAV 95

Query: 439 MNKCFQKYSEQRERRDMKYHKRKHS 513
               F +Y+E  ER+ ++  K K +
Sbjct: 96  TAHLFNRYTEDEERKRVEQQKNKEA 120


>AF241847-1|AAF71523.1|  468|Caenorhabditis elegans LAG-3B protein.
          Length = 468

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 22/85 (25%), Positives = 38/85 (44%)
 Frame = +1

Query: 259 EEKQIPAKIEPLPEDLVEDKLRGDLGYNLIMKECEAQLHQLSVEFFRKSFEQMICKRAEI 438
           EE   P   + LP    E  + GDL      +E   Q  +L+   + K+  +MI  +  +
Sbjct: 15  EEPTAPFVNDNLPNPEDEPTI-GDLNAFHSGEELHRQRSELARANYEKARPEMIANQRAV 73

Query: 439 MNKCFQKYSEQRERRDMKYHKRKHS 513
               F +Y+E  ER+ ++  K K +
Sbjct: 74  TAHLFNRYTEDEERKRVEQQKNKEA 98


>AF241846-1|AAF71522.1|  490|Caenorhabditis elegans LAG-3A protein.
          Length = 490

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 22/85 (25%), Positives = 38/85 (44%)
 Frame = +1

Query: 259 EEKQIPAKIEPLPEDLVEDKLRGDLGYNLIMKECEAQLHQLSVEFFRKSFEQMICKRAEI 438
           EE   P   + LP    E  + GDL      +E   Q  +L+   + K+  +MI  +  +
Sbjct: 37  EEPTAPFVNDNLPNPEDEPTI-GDLNAFHSGEELHRQRSELARANYEKARPEMIANQRAV 95

Query: 439 MNKCFQKYSEQRERRDMKYHKRKHS 513
               F +Y+E  ER+ ++  K K +
Sbjct: 96  TAHLFNRYTEDEERKRVEQQKNKEA 120


>Z81456-1|CAB03810.1|  548|Caenorhabditis elegans Hypothetical
           protein B0462.1 protein.
          Length = 548

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +1

Query: 421 CKRAEIMNKCFQKYSEQRERRDMKYHKRKHSYR 519
           CK AE++N  F +Y+++ +    +Y K+   +R
Sbjct: 305 CKEAEVLNNAFDEYNKRMDELHNEYCKKSDYWR 337


>U53340-3|AAA96208.1|  578|Caenorhabditis elegans Hypothetical
           protein F02E8.5 protein.
          Length = 578

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = +3

Query: 501 TETQLQKDFH--ENDNLNVL-KIAKLDEQNNSAMINRQTIDNMNRILEEQNKATARFAAI 671
           T T L K     END ++ L KI +L+EQ    +     ++   R    Q+  T+    I
Sbjct: 192 TVTMLTKQIQDIENDRIHFLNKIRELNEQRVDFLNAEVALEEKRRNSRIQDMITSAVQDI 251

Query: 672 TDSHTKI 692
           TD  TK+
Sbjct: 252 TDKDTKL 258


>U41007-21|AAK84502.1|  465|Caenorhabditis elegans Hypothetical
           protein C33H5.18b protein.
          Length = 465

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -2

Query: 528 ENPSVAVFPFMVFHVSALTLFAILLKAFVHYFRPFTNHLFK 406
           + P + + PF VFH  AL+LFA +L  F  +F       FK
Sbjct: 353 KEPIIQLCPF-VFHSIALSLFASILGPFGGFFASGFKRAFK 392


>U41007-20|AAA82275.1|  455|Caenorhabditis elegans Hypothetical
           protein C33H5.18a protein.
          Length = 455

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -2

Query: 528 ENPSVAVFPFMVFHVSALTLFAILLKAFVHYFRPFTNHLFK 406
           + P + + PF VFH  AL+LFA +L  F  +F       FK
Sbjct: 343 KEPIIQLCPF-VFHSIALSLFASILGPFGGFFASGFKRAFK 382


>AF036692-8|AAB88329.1|  162|Caenorhabditis elegans Hypothetical
           protein C44B12.6 protein.
          Length = 162

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/72 (23%), Positives = 34/72 (47%)
 Frame = +1

Query: 250 INYEEKQIPAKIEPLPEDLVEDKLRGDLGYNLIMKECEAQLHQLSVEFFRKSFEQMICKR 429
           +NY+EK+IPA I  +       K+ G + +      CE  ++ + V  F  S ++ + + 
Sbjct: 90  LNYDEKRIPAAISEVECSCPHVKVHGGIIH------CEPMMYNMRVMLFDDSCDKYVERV 143

Query: 430 AEIMNKCFQKYS 465
            ++   C   +S
Sbjct: 144 QKVALACVPVFS 155


>AF077536-1|AAK31411.2|  643|Caenorhabditis elegans Hypothetical
           protein C16A11.5 protein.
          Length = 643

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
 Frame = +1

Query: 265 KQIPAKIEPLPEDLVEDKLRGDLGYNLIMKECEAQLHQLS-----VEFFRKSFEQMICKR 429
           KQ  +K+E   E L E+ L+ +  YNL     EA L  +      ++ + +  EQ   K 
Sbjct: 521 KQKHSKLEKHVEGLKEENLKQERNYNLTQSNLEANLSSMREGLTILQQYTEELEQERQKY 580

Query: 430 AEIMNKCFQKYSEQRE 477
            E++    ++ S Q E
Sbjct: 581 QEMLTARSEETSVQAE 596


>X91803-1|CAA62913.1|  880|Caenorhabditis elegans sodium-calcium
           exchanger protein.
          Length = 880

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
 Frame = -2

Query: 351 HYEIITEIPSELIFNKVLWQRFNFGGDLFFFII----NSFFAGLLGPMVASFTKGLNSTA 184
           H+ I+  + +E + N  L    +   ++   +I    N+F AG LGP     +   N   
Sbjct: 118 HFTIMVRVWNETVSNLTLMALGSSAPEILLSVIEICGNNFEAGELGPSTIVGSAAFNLFI 177

Query: 183 LVRADILNLPN 151
           ++   I+ +PN
Sbjct: 178 IIAVCIMAIPN 188


>AL132858-14|CAJ90511.1|  873|Caenorhabditis elegans Hypothetical
           protein Y113G7A.4b protein.
          Length = 873

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
 Frame = -2

Query: 351 HYEIITEIPSELIFNKVLWQRFNFGGDLFFFII----NSFFAGLLGPMVASFTKGLNSTA 184
           H+ I+  + +E + N  L    +   ++   +I    N+F AG LGP     +   N   
Sbjct: 118 HFTIMVRVWNETVSNLTLMALGSSAPEILLSVIEICGNNFEAGELGPSTIVGSAAFNLFI 177

Query: 183 LVRADILNLPN 151
           ++   I+ +PN
Sbjct: 178 IIAVCIMAIPN 188


>AL132858-13|CAB60477.1|  880|Caenorhabditis elegans Hypothetical
           protein Y113G7A.4a protein.
          Length = 880

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
 Frame = -2

Query: 351 HYEIITEIPSELIFNKVLWQRFNFGGDLFFFII----NSFFAGLLGPMVASFTKGLNSTA 184
           H+ I+  + +E + N  L    +   ++   +I    N+F AG LGP     +   N   
Sbjct: 118 HFTIMVRVWNETVSNLTLMALGSSAPEILLSVIEICGNNFEAGELGPSTIVGSAAFNLFI 177

Query: 183 LVRADILNLPN 151
           ++   I+ +PN
Sbjct: 178 IIAVCIMAIPN 188


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,008,244
Number of Sequences: 27780
Number of extensions: 309252
Number of successful extensions: 1050
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)