Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20594
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   2.8  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   3.7  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   3.7  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    22   4.9  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   8.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   8.5  

>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 11  YKYF*GIHMNSTKNSSYDSYNDRL 82
           YKY    + N+  N++Y++YN +L
Sbjct: 322 YKYSNYNNYNNYNNNNYNNYNKKL 345


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 5/24 (20%), Positives = 14/24 (58%)
 Frame = -2

Query: 321 ELIFNKVLWQRFNFGGDLFFFIIN 250
           ++ +N  +W RFN    ++ + ++
Sbjct: 120 DVFYNTAVWARFNVNEQMYLYALS 143


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 5/24 (20%), Positives = 14/24 (58%)
 Frame = -2

Query: 321 ELIFNKVLWQRFNFGGDLFFFIIN 250
           ++ +N  +W RFN    ++ + ++
Sbjct: 120 DVFYNTAVWARFNVNEQMYLYALS 143


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 549 HLNCHFHENPSVAVFP 502
           ++ CH+ +NP    FP
Sbjct: 128 YVQCHYKQNPEKFFFP 143


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 125 NLSFSK*CFY*EFLQVYHCSCRKMNS 48
           N+  +K  F  + L+   CS RK+NS
Sbjct: 64  NIGINKWRFLLQCLEDLDCSLRKLNS 89


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -1

Query: 637 SSKILFILSIVCLLI 593
           SSKI FILS+V L I
Sbjct: 23  SSKIEFILSVVGLAI 37


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -1

Query: 637 SSKILFILSIVCLLI 593
           SSKI FILS+V L I
Sbjct: 76  SSKIEFILSVVGLAI 90


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = +1

Query: 424 KRAEIMNKCFQKYSEQRERRDMKYHKRKHSYRRIFMK 534
           +RAEI+ K  +  ++Q+  + +  +K+    +R+F K
Sbjct: 415 QRAEILAKEHKAAADQKLEKHLIEYKKMLKIKRLFGK 451


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,611
Number of Sequences: 438
Number of extensions: 3653
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)