Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20594
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g64820.1 68414.m07349 MATE efflux family protein similar to r...    31   0.56 
At5g56250.2 68418.m07020 expressed protein                             31   0.73 
At5g56250.1 68418.m07019 expressed protein                             31   0.73 
At4g36270.1 68417.m05158 ATP-binding region, ATPase-like domain-...    29   3.9  
At1g08730.1 68414.m00969 myosin heavy chain (PCR43) identical to...    29   3.9  
At3g46200.1 68416.m05001 MutT/nudix family protein similar to he...    28   6.8  
At1g66780.1 68414.m07591 MATE efflux family protein contains TIG...    28   6.8  
At5g18770.1 68418.m02230 F-box family protein contains F-box dom...    27   9.0  
At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA ...    27   9.0  

>At1g64820.1 68414.m07349 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family; contains 12
           transmembrane domains, PMID: 11152613
          Length = 502

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
 Frame = -2

Query: 624 YSYCQLSAC*SLHCCSVHLIWLFLIHLNCHFHENPSVAVFP--FMVFHVSALTLFAILLK 451
           Y+Y  +  C  + C S+ ++W F+  L   FH++P ++     + ++ + AL  F  LL+
Sbjct: 110 YTYSSM-LCLLVFCFSISIVWFFMDKLLEIFHQDPLISQLACRYSIWLIPALFGFT-LLQ 167

Query: 450 AFVHYFR 430
               YF+
Sbjct: 168 PMTRYFQ 174


>At5g56250.2 68418.m07020 expressed protein
          Length = 811

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
 Frame = +2

Query: 38  NSTKNSSYDSYNDRLGEILNRSITSKMRDSS-----IDETLAGFGKLRISALTKAVELSP 202
           N TK +   SY++R+       +++K++  S     IDE  AG G + I A  + + +  
Sbjct: 245 NGTKWAMISSYSNRVVSDDKPEVSNKVKKRSVSRARIDEDAAGIGPVYIDAKGQKLRILS 304

Query: 203 LVKEATIGPNSPAKKELIMKKNKSPPK 283
              E    P+    +E+  KK+ S  K
Sbjct: 305 KFNEKASDPSRREHEEVCEKKSSSEGK 331


>At5g56250.1 68418.m07019 expressed protein
          Length = 811

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
 Frame = +2

Query: 38  NSTKNSSYDSYNDRLGEILNRSITSKMRDSS-----IDETLAGFGKLRISALTKAVELSP 202
           N TK +   SY++R+       +++K++  S     IDE  AG G + I A  + + +  
Sbjct: 245 NGTKWAMISSYSNRVVSDDKPEVSNKVKKRSVSRARIDEDAAGIGPVYIDAKGQKLRILS 304

Query: 203 LVKEATIGPNSPAKKELIMKKNKSPPK 283
              E    P+    +E+  KK+ S  K
Sbjct: 305 KFNEKASDPSRREHEEVCEKKSSSEGK 331


>At4g36270.1 68417.m05158 ATP-binding region, ATPase-like
           domain-containing protein low similarity to microrchidia
           [Mus musculus] GI:5410255; contains Pfam profile
           PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
           HSP90-like domain protein
          Length = 625

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = +3

Query: 501 TETQLQ-KDFHENDNLNVLKIAKLDEQNNSAMINRQTIDNMNRILEEQNKATARFAAITD 677
           TE  L  K  HE    N+    + +E         QT+ N+ + LEE     AR A + D
Sbjct: 543 TENNLVGKSAHEISEENIQLFMRCEEYVKKETELEQTVSNLAKELEETKSKCARLALLVD 602

Query: 678 S 680
           +
Sbjct: 603 A 603


>At1g08730.1 68414.m00969 myosin heavy chain (PCR43) identical to
            myosin heavy chain PCR43 (PIR:T00727) [Arabidopsis
            thaliana]; similar to ESTs gb|R30087 and gb|AA394762
          Length = 1538

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 23/76 (30%), Positives = 34/76 (44%)
 Frame = +2

Query: 47   KNSSYDSYNDRLGEILNRSITSKMRDSSIDETLAGFGKLRISALTKAVELSPLVKEATIG 226
            K S  D    +  EIL    + +     +DET A   K R +A   A E  P++KE  I 
Sbjct: 917  KRSRGDLEEAKTQEILKLKSSFEEMRKKVDETNALLLKEREAAKKAAEEAPPVIKETQIL 976

Query: 227  PNSPAKKELIMKKNKS 274
                 K EL+ ++ +S
Sbjct: 977  VEDTKKIELMTEELES 992


>At3g46200.1 68416.m05001 MutT/nudix family protein similar to head
           organizer protein P17F11 GI:17976973 from [Xenopus
           laevis]; contains a NUDIX hydrolase domain IPR000086
          Length = 311

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = +2

Query: 71  NDRLGEILNRSITSKMRDSSIDETLAGFGKLRISALTKAVELSPLVKEATIGP 229
           N + GE+LN+ +T +M DS I E +   G +  S+L+  + +    +E  + P
Sbjct: 185 NVQTGEVLNKKVTQEMFDSIICEVVEETG-IPASSLSSPLFIGISRRELNVRP 236


>At1g66780.1 68414.m07591 MATE efflux family protein contains
           TIGRfam profile: TIGR00797: MATE efflux family protein,
           Pfam profile PF01554: Uncharacterized membrane protein
           family
          Length = 485

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/67 (23%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
 Frame = -2

Query: 624 YSYCQLSAC*SLHCCSVHLIWLFLIHLNCHFHENPSVAVFP--FMVFHVSALTLFAILLK 451
           Y+Y  +  C  L C  + L+W+F+  L   FH++P ++     + ++ + AL  +++ L+
Sbjct: 116 YTYGSM-LCLLLVCFPISLLWVFMDKLLELFHQDPLISQLACRYSIWLIPALFGYSV-LQ 173

Query: 450 AFVHYFR 430
           +   +F+
Sbjct: 174 SMTRFFQ 180


>At5g18770.1 68418.m02230 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 481

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 609 LSAC*SLHCCSVHLIWL 559
           LSAC +L C  +HL+WL
Sbjct: 151 LSACQALVCLKLHLVWL 167


>At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA
           Helicase [Arabidopsis thaliana] GI:10944747
          Length = 606

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +1

Query: 376 QLSVEFFRKSFEQMICKRAEIMNKC 450
           Q+ +E+F +SF++MICK +  +N C
Sbjct: 578 QMLLEYFGESFDRMICKSS--LNPC 600


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,774,941
Number of Sequences: 28952
Number of extensions: 269213
Number of successful extensions: 804
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)