Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20593
         (541 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...   113   1e-26
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...   113   1e-26
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    29   0.58 
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    27   2.3  
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual     25   7.2  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   7.2  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    25   9.5  

>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score =  113 bits (273), Expect = 1e-26
 Identities = 52/85 (61%), Positives = 60/85 (70%)
 Frame = +2

Query: 254 IAKGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFEVIL 433
           + KG TYGKP   GVN LK  R+ +  AEE            +SYWV QD++YK+FEVIL
Sbjct: 75  VPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYWVNQDATYKFFEVIL 134

Query: 434 VDPSHKAIRRDPKINWIVNAVHKHR 508
           VDPSHKAIRRDP+INWIVN VHKHR
Sbjct: 135 VDPSHKAIRRDPRINWIVNPVHKHR 159



 Score = 99.1 bits (236), Expect = 4e-22
 Identities = 42/62 (67%), Positives = 53/62 (85%)
 Frame = +3

Query: 33  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYV 212
           MGAY+Y++EL +KK SDV  FL RVR W+YRQ+  +HRA RP+RPDKARRLGY+AKQGYV
Sbjct: 1   MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60

Query: 213 VF 218
           ++
Sbjct: 61  IY 62


>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score =  113 bits (273), Expect = 1e-26
 Identities = 52/85 (61%), Positives = 60/85 (70%)
 Frame = +2

Query: 254 IAKGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFEVIL 433
           + KG TYGKP   GVN LK  R+ +  AEE            +SYWV QD++YK+FEVIL
Sbjct: 75  VPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYWVNQDATYKFFEVIL 134

Query: 434 VDPSHKAIRRDPKINWIVNAVHKHR 508
           VDPSHKAIRRDP+INWIVN VHKHR
Sbjct: 135 VDPSHKAIRRDPRINWIVNPVHKHR 159



 Score = 99.1 bits (236), Expect = 4e-22
 Identities = 42/62 (67%), Positives = 53/62 (85%)
 Frame = +3

Query: 33  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYV 212
           MGAY+Y++EL +KK SDV  FL RVR W+YRQ+  +HRA RP+RPDKARRLGY+AKQGYV
Sbjct: 1   MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60

Query: 213 VF 218
           ++
Sbjct: 61  IY 62


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 28.7 bits (61), Expect = 0.58
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 393 LHKILHTSISRLSSWTRHTRPFVAILRSTGS*MLYISI 506
           L+KIL  S  ++ ++T H  P V ++ S     LYIS+
Sbjct: 47  LYKILQISAPKVGNFTIHDAPVVGLIDSILEYYLYISV 84


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 398  QDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHK 502
            +  S KY E     P H  +   PK  WI++ +HK
Sbjct: 1182 KSESNKYQEQAYSTPLHHTLNVLPKNKWILSRMHK 1216


>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 99  LRVRVWQYRQLTRMHRAPRPTRPD 170
           L+  +W Y  L R++  PR   PD
Sbjct: 280 LKETMWDYLNLVRVYTRPRGLEPD 303


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 355 SLRWSPCVELLLGCTRFF 408
           SL+  P V LL+G TRFF
Sbjct: 568 SLKVPPLVPLLIGTTRFF 585


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 343 TCWPSLRWSPCVELLLGCT 399
           +C PS R  P +ELLL C+
Sbjct: 595 SCGPSYRLLPKIELLLPCS 613


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,334,063
Number of Sequences: 5004
Number of extensions: 46415
Number of successful extensions: 116
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)