Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20593
(541 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0257 + 11145558-11145876,11148181-11148347,11149114-111493... 105 2e-23
03_05_0228 - 22137771-22138016,22138109-22138306,22138852-221390... 105 2e-23
06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687 33 1e-04
05_02_0037 + 5883285-5884292 30 1.4
12_02_1111 - 26157796-26160330 28 5.5
06_01_1001 + 7783072-7783493,7783530-7784212,7784582-7784592 28 5.5
02_05_1139 - 34381575-34381878,34382181-34382865,34383479-34383881 27 7.2
05_07_0176 - 28168595-28169806 27 9.6
04_03_0673 - 18562497-18563010,18563080-18563471,18563553-185636... 27 9.6
01_05_0293 - 20532559-20532572,20532573-20532798,20532926-205339... 27 9.6
>05_03_0257 +
11145558-11145876,11148181-11148347,11149114-11149311,
11149405-11149650
Length = 309
Score = 105 bits (253), Expect = 2e-23
Identities = 46/85 (54%), Positives = 57/85 (67%)
Frame = +2
Query: 254 IAKGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFEVIL 433
+ KG YGKPK G+ QLK RN +S+AEE +SYWV +DS+YKYFE+IL
Sbjct: 180 VPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEIIL 239
Query: 434 VDPSHKAIRRDPKINWIVNAVHKHR 508
VD +H AIR DP+INW+ VHKHR
Sbjct: 240 VDVAHSAIRNDPRINWLCKPVHKHR 264
Score = 96.7 bits (230), Expect = 1e-20
Identities = 42/61 (68%), Positives = 51/61 (83%)
Frame = +3
Query: 36 GAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYVV 215
GAY+Y+ EL+R+K SDVMRF+ RVR W+YRQ + R RPTRPDKARRLGY+AKQGYVV
Sbjct: 107 GAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYVV 166
Query: 216 F 218
+
Sbjct: 167 Y 167
>03_05_0228 -
22137771-22138016,22138109-22138306,22138852-22139018,
22139129-22139132
Length = 204
Score = 105 bits (253), Expect = 2e-23
Identities = 46/85 (54%), Positives = 57/85 (67%)
Frame = +2
Query: 254 IAKGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFEVIL 433
+ KG YGKPK G+ QLK RN +S+AEE +SYWV +DS+YKYFE+IL
Sbjct: 75 VPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEIIL 134
Query: 434 VDPSHKAIRRDPKINWIVNAVHKHR 508
VD +H AIR DP+INW+ VHKHR
Sbjct: 135 VDVAHSAIRNDPRINWLCKPVHKHR 159
Score = 98.7 bits (235), Expect = 3e-21
Identities = 43/62 (69%), Positives = 52/62 (83%)
Frame = +3
Query: 33 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYV 212
MGAY+Y+ EL+R+K SDVMRF+ RVR W+YRQ + R RPTRPDKARRLGY+AKQGYV
Sbjct: 1 MGAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYV 60
Query: 213 VF 218
V+
Sbjct: 61 VY 62
>06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687
Length = 353
Score = 33.5 bits (73), Expect(2) = 1e-04
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = +2
Query: 419 FEVILVDPSHKAIRRDPKINWIVNAVHKHRR 511
FE+ILVD +H AIR DPK + A + RR
Sbjct: 299 FEIILVDVAHSAIRDDPKDQLALQACAQARR 329
Score = 29.5 bits (63), Expect(2) = 1e-04
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 254 IAKGATYGKPKSHGVNQLKPTRN 322
+ KG Y KPK G+ QLK RN
Sbjct: 270 VHKGIVYSKPKHQGITQLKFQRN 292
>05_02_0037 + 5883285-5884292
Length = 335
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = +2
Query: 116 AVPSVDSYAPRSQAHKAGQSPKTRLP---C*TRLCCIQNPCATWWPQASIAKG 265
AV ++ AP ++ +A +SP C R CC +P + WWP+ G
Sbjct: 271 AVFPTEAAAPATEGKEAAKSPDAAAQGGWCLFR-CCWPSPPSVWWPRCGCGGG 322
>12_02_1111 - 26157796-26160330
Length = 844
Score = 27.9 bits (59), Expect = 5.5
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +1
Query: 214 YSESVCDVVAASVHC*GCHLWQAQEP 291
Y++ VC+V+ +V G + W+A++P
Sbjct: 480 YAQLVCEVILPAVRISGTNSWEARDP 505
>06_01_1001 + 7783072-7783493,7783530-7784212,7784582-7784592
Length = 371
Score = 27.9 bits (59), Expect = 5.5
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = -2
Query: 258 AMDACGHHVAHGF*IQHNLV*HGSLVFGLCPALWAWERGAYESTDGTAIPSH 103
A+D CGHH HG + LV G+ V G + Y +D T+I H
Sbjct: 147 AVDGCGHHDCHGRAYRVALV--GTDVAGGATHAAVYSSETYAWSDPTSIDHH 196
>02_05_1139 - 34381575-34381878,34382181-34382865,34383479-34383881
Length = 463
Score = 27.5 bits (58), Expect = 7.2
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = +2
Query: 98 VACEGMAVPSVDSYAPRSQAHKAGQSPKTRLPC*TRLCCIQNPCATWWPQASIAKG--AT 271
+ C G+ +P+ + AP S + G+ P+ P R C P +T P A+ A A
Sbjct: 1 MGCSGLRLPTWAAAAPPSPSDWDGRRPRRGAPVVRRRC--SAPSSTPAPSAAAAPSHLAA 58
Query: 272 YGKPK 286
G P+
Sbjct: 59 GGSPR 63
>05_07_0176 - 28168595-28169806
Length = 403
Score = 27.1 bits (57), Expect = 9.6
Identities = 18/58 (31%), Positives = 23/58 (39%)
Frame = -3
Query: 452 PCVTGPRG*PRNTCMKNLVQPSKSSTHGDHRNDGQHVPQQWIEGCAWASTG*HHGSWA 279
PC+ P G + C S HG H+PQQ ++ G H GSWA
Sbjct: 59 PCLLRPNGGDSSVCCLLC-----SGGHGISVVHAAHLPQQPVDARHARFFGSHDGSWA 111
>04_03_0673 -
18562497-18563010,18563080-18563471,18563553-18563649,
18563977-18564149,18564349-18564485,18564806-18564872
Length = 459
Score = 27.1 bits (57), Expect = 9.6
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 265 CHLWQAQEPWCQPVEAH 315
CHL Q +EPW ++AH
Sbjct: 56 CHLQQEEEPWRCQIKAH 72
>01_05_0293 -
20532559-20532572,20532573-20532798,20532926-20533960,
20534670-20534996
Length = 533
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3
Query: 126 QLTRMHRAPRPTRPD 170
QLTR+H P P RPD
Sbjct: 73 QLTRLHPPPEPPRPD 87
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,192,524
Number of Sequences: 37544
Number of extensions: 345430
Number of successful extensions: 751
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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