Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20593
(541 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.) 112 2e-25
SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053) 31 0.46
SB_45487| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_3451| Best HMM Match : HOK_GEF (HMM E-Value=9.4) 29 2.4
SB_52974| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24) 27 7.4
SB_40791| Best HMM Match : G2F (HMM E-Value=0.9) 27 9.8
SB_6379| Best HMM Match : Proteasome (HMM E-Value=0) 27 9.8
>SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 112 bits (270), Expect = 2e-25
Identities = 47/62 (75%), Positives = 58/62 (93%)
Frame = +3
Query: 33 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYV 212
MGAY+Y++ELY+KK SD++RFLLRVR WQYRQLT +HRA RPTRPDKARRLGY+AKQG+V
Sbjct: 1 MGAYKYLEELYKKKQSDLLRFLLRVRCWQYRQLTAIHRATRPTRPDKARRLGYKAKQGFV 60
Query: 213 VF 218
++
Sbjct: 61 IY 62
Score = 112 bits (270), Expect = 2e-25
Identities = 51/85 (60%), Positives = 60/85 (70%)
Frame = +2
Query: 254 IAKGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFEVIL 433
+ KGATYGKP + GVN+LK R+L+S+AEE +SYWV QDS YKYFEVI+
Sbjct: 75 VPKGATYGKPVNQGVNELKFQRSLRSVAEERAGRYCGGLRVLNSYWVGQDSIYKYFEVIM 134
Query: 434 VDPSHKAIRRDPKINWIVNAVHKHR 508
VDP HKAIRRD +INWI HKHR
Sbjct: 135 VDPFHKAIRRDARINWICKPTHKHR 159
>SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1434
Score = 32.7 bits (71), Expect = 0.20
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +2
Query: 122 PSVDSYAPRSQAHKAGQSPKT-RLPC*TRLCCIQNPCATWWPQASIAKGATYGKPKSH 292
P D+ AH+ P T ++PC C QNPC+ P + +TYG P+ +
Sbjct: 239 PKTDANGGMQIAHQLPYPPYTGQIPCLPSSCAPQNPCS---PPGCTPQYSTYGYPQGY 293
>SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)
Length = 1152
Score = 31.5 bits (68), Expect = 0.46
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Frame = +2
Query: 80 RCYAFFVA---CEGMA-VPSVDSYAPRSQAHKAGQSPKT-RLPC*TRLCCIQNPCATWWP 244
RCY VA C ++ P +D+ A + P T ++PC C QNPC+ P
Sbjct: 702 RCYDINVAGINCRIISHPPKIDTTGGMQMAQQLSYPPYTGQVPCLPSSCTPQNPCS---P 758
Query: 245 QASIAKGATYGKPKSHGVNQ 304
+ +T G P++ G Q
Sbjct: 759 PGCTPQYSTSGYPQAPGYPQ 778
>SB_45487| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1236
Score = 29.9 bits (64), Expect = 1.4
Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
Frame = -3
Query: 443 TGPRG*PRNTCMKNLVQPSKSSTHGDHRNDGQHVPQQWIEGCAWASTG*HHGSWACHK-W 267
T P P +K Q + DH G+H Q+I+G GSWA K W
Sbjct: 202 TEPNDSPNIKKVKTFFQSCMNVDAIDHL--GEHPLLQYIKGL---------GSWAFDKDW 250
Query: 266 HP*QWTLAATTSHTDSEYNITLFST 192
+P +W T ++ EY +F T
Sbjct: 251 NPKEWNFYDTLANMHREYPAEIFFT 275
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = -3
Query: 290 GSWACHK-WHP*QWTLAATTSHTDSEYNITLFST 192
GSWA K W+P +W T + EY +F T
Sbjct: 884 GSWAIDKDWNPKEWNFYNTLAKMHREYPAEVFFT 917
>SB_3451| Best HMM Match : HOK_GEF (HMM E-Value=9.4)
Length = 173
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 90 RFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQ 203
+F ++ YR+ T+MH +RP + R G+R KQ
Sbjct: 16 KFFVKRLTTPYRRRTQMHLLVSTSRPASSWRRGFRGKQ 53
>SB_52974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 660
Score = 28.3 bits (60), Expect = 4.2
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +3
Query: 15 LPQAAKMGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYR 194
LP A +G Y + ++ +R + + +R + +RV+ Y T T D A G
Sbjct: 474 LPDNANLGCYPWSKQTFRHEGPNHIRTSVHIRVYAYIMSTTQQSKITKTITDAAVITGLV 533
Query: 195 AKQGYV 212
A G+V
Sbjct: 534 AGIGWV 539
>SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24)
Length = 429
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Frame = +2
Query: 167 GQSPKTRLPC*TRLCCIQNPCATW----WPQASIAKG 265
G+ K R P + LC + PCATW W Q S+ G
Sbjct: 134 GKCDKQRQPSSSTLCNM-GPCATWQTGTWSQCSVTCG 169
>SB_40791| Best HMM Match : G2F (HMM E-Value=0.9)
Length = 535
Score = 27.1 bits (57), Expect = 9.8
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = +3
Query: 15 LPQAAKMGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYR 194
LP A +G Y + ++ +R + +R + +RV+ Y T T D A G
Sbjct: 437 LPDNANLGCYPWSKQKFRHEGPTHIRTSVHIRVYAYIMSTTQQSKITKTITDAAVITGIV 496
Query: 195 AKQGYV 212
A G+V
Sbjct: 497 AGIGWV 502
>SB_6379| Best HMM Match : Proteasome (HMM E-Value=0)
Length = 909
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 410 MKNLVQPSKSSTHGDHRNDGQHVPQQWIEGCAW 312
++NL P + T G G + P+ W+ GCAW
Sbjct: 423 LQNLYIPPEGVT-GIPLGVGNYGPEAWLLGCAW 454
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,681,301
Number of Sequences: 59808
Number of extensions: 401793
Number of successful extensions: 891
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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