Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20593
         (541 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal prote...   108   2e-24
AL117202-13|CAB55075.1|  580|Caenorhabditis elegans Hypothetical...    29   1.6  
Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical pr...    27   6.5  
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    27   6.5  
U55857-5|AAA98031.1|  602|Caenorhabditis elegans Hypothetical pr...    27   6.5  
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    27   6.5  

>U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 15 protein.
          Length = 204

 Score =  108 bits (260), Expect = 2e-24
 Identities = 45/85 (52%), Positives = 60/85 (70%)
 Frame = +2

Query: 254 IAKGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFEVIL 433
           + KG TYGKPK+HGVN+LK  ++ Q++AE             +SYWVA+DS+YK++EV+L
Sbjct: 75  VCKGQTYGKPKTHGVNELKNAKSKQAVAEGRAGRRLGSLRVLNSYWVAEDSTYKFYEVVL 134

Query: 434 VDPSHKAIRRDPKINWIVNAVHKHR 508
           +DP HKAIRR+P   WI   VHKHR
Sbjct: 135 IDPFHKAIRRNPDTQWITKPVHKHR 159



 Score =  108 bits (259), Expect = 3e-24
 Identities = 44/62 (70%), Positives = 56/62 (90%)
 Frame = +3

Query: 33  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYV 212
           MGAY+Y+QE++RKK SD +R+LLR+R W YRQL+ +HR PRPTRP+KARRLGYRAKQG+V
Sbjct: 1   MGAYKYMQEIWRKKQSDALRYLLRIRTWHYRQLSAVHRVPRPTRPEKARRLGYRAKQGFV 60

Query: 213 VF 218
           V+
Sbjct: 61  VY 62


>AL117202-13|CAB55075.1|  580|Caenorhabditis elegans Hypothetical
           protein Y47D3A.16 protein.
          Length = 580

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = -3

Query: 182 SSGFVRPCGPGSAVHTS---QLTVLPYPHTQQKTHNIAQFFPIQLLNISVGTH 33
           S+   RP   GS+  T       V+  PHT   T N    F + LLN+S+  H
Sbjct: 526 STTTTRPSNVGSSASTPIPLPKRVIKLPHTHTSTQNAQYSFMLLLLNVSLFFH 578


>Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical
           protein R03D7.2 protein.
          Length = 542

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 57  ELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPR 155
           EL R  + + +   ++ R W    LTR+HR P+
Sbjct: 264 ELKRAAIGEPLTLAVKGRRWPSMHLTRVHRCPK 296


>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
           protein 1 protein.
          Length = 4568

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 401 DSSYKYFEVILVDPSHKAIRRDP-KINWIVNAVHK 502
           D  Y  F  +L D + K  R DP K++W V AVHK
Sbjct: 420 DDEYDKFIALLRDINKKK-RDDPSKLSWKVTAVHK 453


>U55857-5|AAA98031.1|  602|Caenorhabditis elegans Hypothetical
           protein K08D10.5 protein.
          Length = 602

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 57  ELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPR 155
           EL R  + + +   ++ R W    LTR+HR P+
Sbjct: 363 ELKRAAVGEPLTLAVKGRRWSSMHLTRVHRCPK 395


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
           protein.
          Length = 4568

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 401 DSSYKYFEVILVDPSHKAIRRDP-KINWIVNAVHK 502
           D  Y  F  +L D + K  R DP K++W V AVHK
Sbjct: 420 DDEYDKFIALLRDINKKK-RDDPSKLSWKVTAVHK 453


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,147,646
Number of Sequences: 27780
Number of extensions: 276697
Number of successful extensions: 636
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)