Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20593
         (541 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   4.6  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   6.1  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   6.1  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   8.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.1  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   8.1  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   8.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   8.1  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +1

Query: 13  VCHRLLRWVPTDI 51
           VCH  + W+PT +
Sbjct: 807 VCHNGMNWMPTHL 819


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = -2

Query: 183 VFGLCPALWAWERGAYESTD 124
           +  +C  LW W R  Y  T+
Sbjct: 51  ILPVCNGLWRWIRLTYGQTN 70


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = -2

Query: 183 VFGLCPALWAWERGAYESTD 124
           +  +C  LW W R  Y  T+
Sbjct: 89  ILPVCNGLWRWIRLTYGQTN 108


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/24 (33%), Positives = 15/24 (62%), Gaps = 4/24 (16%)
 Frame = +1

Query: 373 CVELLLG----CTRFFIQVFRGYP 432
           C+ LL+G    C +F + + +G+P
Sbjct: 284 CMMLLIGHWSGCLQFLVPMLQGFP 307


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/34 (23%), Positives = 13/34 (38%)
 Frame = +2

Query: 86   YAFFVACEGMAVPSVDSYAPRSQAHKAGQSPKTR 187
            Y  +   +    P+     P    H+A +  KTR
Sbjct: 1213 YTVYTKADNAEEPTSQKVPPNQLTHEASELDKTR 1246


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -2

Query: 177 GLCPALWAWERGAY 136
           GLCP++  ++RG +
Sbjct: 357 GLCPSMANYDRGVF 370


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/24 (33%), Positives = 15/24 (62%), Gaps = 4/24 (16%)
 Frame = +1

Query: 373 CVELLLG----CTRFFIQVFRGYP 432
           C+ LL+G    C +F + + +G+P
Sbjct: 252 CMMLLIGHWSGCLQFLVPMLQGFP 275


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -2

Query: 177 GLCPALWAWERGAY 136
           GLCP++  ++RG +
Sbjct: 447 GLCPSMANYDRGVF 460


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,886
Number of Sequences: 438
Number of extensions: 3308
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)