Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20593
(541 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B) 106 8e-24
At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A) 106 8e-24
At3g11170.1 68416.m01355 omega-3 fatty acid desaturase, chloropl... 28 3.5
At1g62360.1 68414.m07036 homeobox protein SHOOT MERISTEMLESS (ST... 28 3.5
At4g39520.1 68417.m05588 GTP-binding protein, putative similar t... 27 6.1
At4g17710.1 68417.m02645 homeobox-leucine zipper family protein ... 27 6.1
At3g18050.1 68416.m02296 expressed protein 27 6.1
>At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)
Length = 204
Score = 106 bits (255), Expect = 8e-24
Identities = 45/85 (52%), Positives = 59/85 (69%)
Frame = +2
Query: 254 IAKGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFEVIL 433
+ KG YGKP + GV QLK R+ +S+AEE +SYW+ +DS+YKY+E+IL
Sbjct: 75 VPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWLNEDSTYKYYEIIL 134
Query: 434 VDPSHKAIRRDPKINWIVNAVHKHR 508
VDP+H A+R DP+INWI N VHKHR
Sbjct: 135 VDPAHNAVRNDPRINWICNPVHKHR 159
Score = 99.1 bits (236), Expect = 2e-21
Identities = 44/62 (70%), Positives = 52/62 (83%)
Frame = +3
Query: 33 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYV 212
MGAY+Y+ EL+RKK SDVMRFL RVR W+YRQ + R RPTRPDKARRLGY+AKQG+V
Sbjct: 1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFV 60
Query: 213 VF 218
V+
Sbjct: 61 VY 62
>At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)
Length = 204
Score = 106 bits (255), Expect = 8e-24
Identities = 45/85 (52%), Positives = 59/85 (69%)
Frame = +2
Query: 254 IAKGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFEVIL 433
+ KG YGKP + GV QLK R+ +S+AEE +SYW+ +DS+YKY+E+IL
Sbjct: 75 VPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWLNEDSTYKYYEIIL 134
Query: 434 VDPSHKAIRRDPKINWIVNAVHKHR 508
VDP+H A+R DP+INWI N VHKHR
Sbjct: 135 VDPAHNAVRNDPRINWICNPVHKHR 159
Score = 99.1 bits (236), Expect = 2e-21
Identities = 44/62 (70%), Positives = 52/62 (83%)
Frame = +3
Query: 33 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYV 212
MGAY+Y+ EL+RKK SDVMRFL RVR W+YRQ + R RPTRPDKARRLGY+AKQG+V
Sbjct: 1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFV 60
Query: 213 VF 218
V+
Sbjct: 61 VY 62
>At3g11170.1 68416.m01355 omega-3 fatty acid desaturase, chloroplast
(FAD7) (FADD) identical to omega-3 fatty acid
desaturase, chloroplast precursor SP:P46310 [Arabidopsis
thaliana (Mouse-ear cress)]; identical to Pfam profile
PF00487: Fatty acid desaturase; identical to cDNA
plastid fatty acid desaturase GI:809491
Length = 446
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 386 YWVAQDSSYKYFEVILVDPSHKAIRRDPKINWIV 487
YW+AQ + + V+ D H + DPK+N +V
Sbjct: 147 YWLAQGTMFWALFVLGHDCGHGSFSNDPKLNSVV 180
>At1g62360.1 68414.m07036 homeobox protein SHOOT MERISTEMLESS (STM)
identical to homeobox protein SHOOT MERISTEMLESS (STM)
SP:Q38874 from [Arabidopsis thaliana]
Length = 382
Score = 28.3 bits (60), Expect = 3.5
Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 5/108 (4%)
Frame = -3
Query: 413 CMKNLVQPSKSSTHGDHRNDGQHVPQQWIEGCAWASTG*HHGSWACHKWHP*QWTL--AA 240
C ++ P ++H H +D QH QQ +G A+ S S P Q T A
Sbjct: 24 CPMMMMMPPIMTSHQHHGHDHQH-QQQEHDGYAYQSHHQQSSSLFLQSLAPPQGTKNKVA 82
Query: 239 TTSHTDS---EYNITLFSTVA*SSGFVRPCGPGSAVHTSQLTVLPYPH 105
++S S Y++ +G + PC S+ + + ++ +PH
Sbjct: 83 SSSSPSSCAPAYSLMEIHHNEIVAGGINPCSSSSSSASVKAKIMAHPH 130
>At4g39520.1 68417.m05588 GTP-binding protein, putative similar to
SP|Q9Y295 Developmentally regulated GTP-binding protein
1 (DRG 1) {Homo sapiens}; contains Pfam profiles
PF02824: TGS domain, PF01018: GTP1/OBG family
Length = 369
Score = 27.5 bits (58), Expect = 6.1
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +3
Query: 108 RVWQYRQLTRMHRAPRPTRPD 170
++W+Y LTR++ P+ PD
Sbjct: 285 KIWEYLDLTRIYTKPKAMNPD 305
>At4g17710.1 68417.m02645 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein similar to
HD-Zip homeo domain OCL4 protein (GI:8920425) [Zea
mays]; contains Pfam PF00046: Homeobox domain and Pfam
PF01852: START domain
Length = 709
Score = 27.5 bits (58), Expect = 6.1
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = -1
Query: 523 SDHASTMLMYSIHDPVDLRIATNG 452
+D++ ++L+YS DPV +++A NG
Sbjct: 605 TDNSGSLLVYSTVDPVAVQLAMNG 628
>At3g18050.1 68416.m02296 expressed protein
Length = 335
Score = 27.5 bits (58), Expect = 6.1
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -2
Query: 171 CPALWAWERGAYESTDGTAIPSHATKNA*HRSVFSYTTPE 52
CP L AW AY +T + S A +N+ S + TTPE
Sbjct: 82 CPVLGAWLYSAYSTTALSRSISAAARNS-SSSSAAVTTPE 120
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,523,384
Number of Sequences: 28952
Number of extensions: 258247
Number of successful extensions: 568
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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