Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20592
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...    29   0.44 
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...    29   0.44 
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    29   0.44 
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    27   3.1  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    26   5.4  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    26   5.4  
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    25   7.2  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    25   7.2  
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    25   9.5  
SPAC17G6.15c |||MTC tricarboxylate transporter|Schizosaccharomyc...    25   9.5  
SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple...    25   9.5  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    25   9.5  
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo...    25   9.5  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 62  DRVWHRALLSKLPSYGIPEGLCKWIASFLDG 154
           D V   A  S+LP YGI  GL  W A++  G
Sbjct: 72  DYVLAHAHSSELPRYGIKWGLANWTAAYATG 102


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 62  DRVWHRALLSKLPSYGIPEGLCKWIASFLDG 154
           D V   A  S+LP YGI  GL  W A++  G
Sbjct: 72  DYVLAHAHSSELPRYGIKWGLANWTAAYATG 102


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = -3

Query: 180 PSTTTVMLRPSKKLA--IHLQRPSGIP*DGSFDRSALCQTLSKAXAISRLTARASPLLSK 7
           PS+T   + PS   A  +H Q+P     D S D +A+      +   +RL+    PLLS 
Sbjct: 207 PSSTVSSIAPSTLEAGNLHSQQPPKFSVDSSVDDNAITPRKPFSKIPNRLSPSTQPLLSN 266

Query: 6   S 4
           S
Sbjct: 267 S 267


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 131 WIASFLDGRSITVVVDGDCSDTMTIN-AGVPQGS 229
           W  SFL G+ +TVV +   S+   IN   +P GS
Sbjct: 519 WSESFLAGKRLTVVKNQAVSNDDNINMVNIPDGS 552


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/58 (25%), Positives = 23/58 (39%)
 Frame = -3

Query: 264 IDIRMKSVGESTEPCGTPALMVMVSEQSPSTTTVMLRPSKKLAIHLQRPSGIP*DGSF 91
           +DI   +   ST P  T    V  S   P+T + +  P+   + +L   S    D  F
Sbjct: 234 VDIAASTTASSTLPVSTSEATVSFSTDIPATPSTLSSPASSSSSYLVETSSTLTDSVF 291


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -3

Query: 495 GVLLRSERANLCLYRVELNQVQFTPFGDS 409
           G+L++ ER NL  YRV L   QF P  DS
Sbjct: 688 GILIKPERYNLFKYRVYL--PQFLPPTDS 714


>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +2

Query: 563 RHFERCPVSESFGRQSQ 613
           ++FE CPVS++ GR S+
Sbjct: 353 QNFEWCPVSDALGRDSK 369


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -2

Query: 409 APESSPLQTQVLIVSLAPRSERDSDGRYIAHPPCCHPHS 293
           AP SS  Q QV +     RS ++S     + PP  HP S
Sbjct: 38  APSSSSSQNQVELDEQFARSLQNSQSSSYSLPPFDHPPS 76


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 234 STEPCGTPALMVMVSEQSPSTTTVMLRPSKKLAIHLQRP 118
           S++P GTP +       SPSTT V    +    I+ + P
Sbjct: 200 SSKPTGTPFVPKSPPSSSPSTTNVSNASTSSAPINPRAP 238


>SPAC17G6.15c |||MTC tricarboxylate transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 548 NTLRKLQGYSLELRAMTKGSFFAVNAQTCVFIGLN 444
           N+    +   L L  MTK   +AV+A   V IGLN
Sbjct: 128 NSANANKSTQLTLPQMTKSYIYAVSASCGVAIGLN 162


>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 442

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +1

Query: 337 QSLSRSVVQERR--SKLVSEVENSLGRVSKWGELNLVQFNPIK 459
           Q LS+++  +R+  +KL   ++   GR+  W EL    F  ++
Sbjct: 36  QQLSKTLFLDRKGKNKLNGTIQKEFGRIRGWKELVTTYFEYVE 78


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 279 NRQHVIDIRMKSVGESTEPCGTPALMV 199
           N+  +   R KSV ES EP G P L +
Sbjct: 134 NKYSLYLYREKSVEESDEPSGIPILFI 160


>SPBC1604.20c |tea2|klp4|kinesin-like protein
           Tea2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 20/64 (31%), Positives = 34/64 (53%)
 Frame = -3

Query: 192 SEQSPSTTTVMLRPSKKLAIHLQRPSGIP*DGSFDRSALCQTLSKAXAISRLTARASPLL 13
           + Q  S + V L  S++ + H +R      +G+F   +L   L+    ISRL+A A+P L
Sbjct: 351 TSQISSLSLVDLAGSERASAHHERRK----EGAFINKSL---LTLGTVISRLSAAANPSL 403

Query: 12  SKSS 1
           + +S
Sbjct: 404 TSNS 407


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,921,248
Number of Sequences: 5004
Number of extensions: 64004
Number of successful extensions: 180
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)