Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20592
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    59   2e-09
AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical ...    56   2e-08
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    50   2e-06
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    46   3e-05
AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical ...    37   0.014
AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical ...    35   0.044
AC090999-1|AAK26146.1|  390|Caenorhabditis elegans Hypothetical ...    30   1.6  
Z78419-9|CAB01707.1| 1153|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z73907-3|CAA98126.1| 1153|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    27   8.7  
L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle position...    27   8.7  
AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane...    27   8.7  
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    27   8.7  
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    27   8.7  

>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 32/72 (44%), Positives = 39/72 (54%)
 Frame = +2

Query: 35  VSLDIAKAFDRVWHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMTINAG 214
           + LD +KAFDR+ H  LL KL S    + L  W+  FL  RS  V +    S       G
Sbjct: 17  IYLDFSKAFDRLPHDLLLDKLVSLRKNKNLLIWVNEFLSNRSFRVRIGQTLSSRKFATCG 76

Query: 215 VPQGSVLSPTLF 250
           VPQG+VLSP LF
Sbjct: 77  VPQGAVLSPLLF 88


>AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical
           protein C44B12.7 protein.
          Length = 389

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 29/68 (42%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
 Frame = +2

Query: 53  KAFDRVWHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTM-TINAGVPQGS 229
           KAFD+V H  LL KL  +GI    C W   FL  R+ +V V+      +  I++GVP+GS
Sbjct: 2   KAFDQVNHSLLLQKLHDFGINPLFCNWFHDFLSSRTFSVKVNNHIDPNIHPISSGVPKGS 61

Query: 230 VLSPTLFI 253
           V  P LF+
Sbjct: 62  VSGPFLFL 69


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
 Frame = +2

Query: 26  ALAVSLDIAKAFDRVWHRALLSKL-PSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMT 202
           A+   LD+  AFD+V  + L + L  + GI   +  W+ ++L  R I    D   S   T
Sbjct: 469 AIMACLDLRAAFDKVPTKKLCNDLMEAQGIEPKIKLWLGNYLHKRLIRTSHDNHWSKWHT 528

Query: 203 INAGVPQGSVLSPTLF 250
           +  GVPQGSV+SP LF
Sbjct: 529 LLGGVPQGSVISPNLF 544


>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
            protein F21E9.1 protein.
          Length = 1170

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
 Frame = +2

Query: 92   KLPSYGIPEGLCKWIASFLDGRSITVVVDGDCS-DTMTINAGVPQGSVLSPTLFI 253
            KL  +G+    C W   FL+ R+ +V ++   S ++  I++GVPQGSV  P LFI
Sbjct: 839  KLAKFGLDSLTCSWYKEFLENRTFSVKINKFVSKNSYPISSGVPQGSVSGPLLFI 893


>AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical
            protein Y113G7B.12 protein.
          Length = 1042

 Score = 36.7 bits (81), Expect = 0.014
 Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
 Frame = +2

Query: 2    EDLESKGEALAVSLDIAKAFDRVWHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDG 181
            E +E+      +   ++ AFD+V H  L+SKL  + +   L  W    +  ++ +V V+ 
Sbjct: 879  EYVEAHKRVDLIHFKLSTAFDKVPHEFLISKLNDFNVHPTLRNWFRKLMSPKTFSVQVND 938

Query: 182  DC-SDTMTINAGVPQGSVLSPTLFI 253
               S+      G P+GS     +F+
Sbjct: 939  HLESEKHNCQIGAPRGSESRQFMFL 963


>AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical
           protein Y32G9A.9 protein.
          Length = 417

 Score = 35.1 bits (77), Expect = 0.044
 Identities = 28/104 (26%), Positives = 40/104 (38%)
 Frame = +2

Query: 35  VSLDIAKAFDRVWHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMTINAG 214
           V +D  KAFD V H+A+   L   G  E     +         T         T+ +  G
Sbjct: 40  VFIDFKKAFDSVEHQAIWKSLDEQGADEAYIDLLKECYK-NCTTNFTPFLRPITVPVTKG 98

Query: 215 VPQGSVLSPTLFIRISMTCCLLMACIAMRMTARGMRDISAIRVS 346
           V QG  +SP LF          ++CI  +  A     I  +RV+
Sbjct: 99  VRQGDPISPNLFSACLEHVFRKLSCIEFKGEAEDYNTIPGMRVN 142


>AC090999-1|AAK26146.1|  390|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.8 protein.
          Length = 390

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 249 KSVGESTEPCGTPALMVMVSEQ 184
           KS GE T+PCGTP    + SE+
Sbjct: 57  KSTGERTDPCGTPHTAFLGSEK 78


>Z78419-9|CAB01707.1| 1153|Caenorhabditis elegans Hypothetical
           protein F29D11.2 protein.
          Length = 1153

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -2

Query: 586 NWTSLEMSTPSIPILSESCRDTPWNC 509
           NW    M      +L  SCRDT W C
Sbjct: 265 NWPVDAMKHSPRELLLRSCRDTAWEC 290


>Z73907-3|CAA98126.1| 1153|Caenorhabditis elegans Hypothetical
           protein F29D11.2 protein.
          Length = 1153

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -2

Query: 586 NWTSLEMSTPSIPILSESCRDTPWNC 509
           NW    M      +L  SCRDT W C
Sbjct: 265 NWPVDAMKHSPRELLLRSCRDTAWEC 290


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 21/72 (29%), Positives = 29/72 (40%)
 Frame = +2

Query: 35  VSLDIAKAFDRVWHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMTINAG 214
           V +D  KAFD V H+A+   L   G  +G    +         T          + +  G
Sbjct: 518 VFIDFKKAFDTVEHQAIWKSLDEQG-ADGAYIDLLKECYKNCTTNFTPFHRPVAVPVTKG 576

Query: 215 VPQGSVLSPTLF 250
           V QG  +SP LF
Sbjct: 577 VRQGDPISPNLF 588


>L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle positioning
           protein 4 protein.
          Length = 2104

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 346 RDSDGRYIAHPPCCHPHSNACHQ*TAC 266
           R +DGR +    C  P  NACH+   C
Sbjct: 63  RLADGRCLVVNECARPSLNACHKDAQC 89


>AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane
           matrix receptor MUP-4 protein.
          Length = 2104

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 346 RDSDGRYIAHPPCCHPHSNACHQ*TAC 266
           R +DGR +    C  P  NACH+   C
Sbjct: 63  RLADGRCLVVNECARPSLNACHKDAQC 89


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
           transcriptase protein.
          Length = 1066

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 21/72 (29%), Positives = 29/72 (40%)
 Frame = +2

Query: 35  VSLDIAKAFDRVWHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMTINAG 214
           V +D  KAFD V H+A+   L   G  +G    +         T          + +  G
Sbjct: 689 VFIDFKKAFDSVEHQAIWKSLDEQG-ADGAYIDLLKECYKNCTTNFTPFHRPVAVPVTKG 747

Query: 215 VPQGSVLSPTLF 250
           V QG  +SP LF
Sbjct: 748 VRQGDPISPNLF 759


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 21/72 (29%), Positives = 29/72 (40%)
 Frame = +2

Query: 35  VSLDIAKAFDRVWHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMTINAG 214
           V +D  KAFD V H+A+   L   G  +G    +         T          + +  G
Sbjct: 428 VFIDFKKAFDSVEHQAIWKSLDEQG-ADGAYIDLLKECYKNCTTNFTPFHRPVAVPVTKG 486

Query: 215 VPQGSVLSPTLF 250
           V QG  +SP LF
Sbjct: 487 VRQGDPISPNLF 498


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,374,778
Number of Sequences: 27780
Number of extensions: 370292
Number of successful extensions: 951
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)