Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20592
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25970.1 68416.m03236 pentatricopeptide (PPR) repeat-containi...    29   2.7  
At5g47820.2 68418.m05908 kinesin-like protein (FRA1) identical t...    28   4.7  
At5g47820.1 68418.m05907 kinesin-like protein (FRA1) identical t...    28   4.7  
At1g59700.1 68414.m06716 glutathione S-transferase, putative sim...    28   4.7  
At1g59670.1 68414.m06711 glutathione S-transferase, putative sim...    28   4.7  
At1g56360.1 68414.m06481 calcineurin-like phosphoesterase family...    28   4.7  
At1g31500.1 68414.m03857 endonuclease/exonuclease/phosphatase fa...    28   6.2  
At1g61590.1 68414.m06940 protein kinase, putative contains prote...    27   8.2  

>At3g25970.1 68416.m03236 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 646

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -3

Query: 570 KCRPQVSQYSQKVA--GILLGIARHDKGVLLRSERANLCLYRVELNQVQFT 424
           KC  Q+S     VA   ++LG A+H  G +     + +C   V+L+ V FT
Sbjct: 409 KCFQQISSKHSTVAWNAMILGYAQHGLGQVSLDLFSQMCNQNVKLDHVTFT 459


>At5g47820.2 68418.m05908 kinesin-like protein (FRA1) identical to
           kinesin-like protein [Arabidopsis thaliana] GI:27260890;
           contains Pfam profile PF00225: Kinesin motor domain
          Length = 1035

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +1

Query: 358 VQERRSKLVSEVEN--SLGRVSKWGELNLVQFNPIKTQVCAFTAKKDPFVMARNSKE 522
           VQE R++L++E+EN  S G+  K  +++      ++ Q+     K++  V     K+
Sbjct: 554 VQEERNRLLAEIENLASDGQAQKLQDVHAQNLKALEAQILDLKKKQESQVQLLKQKQ 610


>At5g47820.1 68418.m05907 kinesin-like protein (FRA1) identical to
           kinesin-like protein [Arabidopsis thaliana] GI:27260890;
           contains Pfam profile PF00225: Kinesin motor domain
          Length = 1035

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +1

Query: 358 VQERRSKLVSEVEN--SLGRVSKWGELNLVQFNPIKTQVCAFTAKKDPFVMARNSKE 522
           VQE R++L++E+EN  S G+  K  +++      ++ Q+     K++  V     K+
Sbjct: 554 VQEERNRLLAEIENLASDGQAQKLQDVHAQNLKALEAQILDLKKKQESQVQLLKQKQ 610


>At1g59700.1 68414.m06716 glutathione S-transferase, putative
           similar to glutathione S-transferase GB:AAF29773
           GI:6856103 from [Gossypium hirsutum]
          Length = 234

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 38  SLDIAKAFDRVWHRALLSKLPSYGIPEGLCKWIASFLDGR 157
           SL+I +  D  W+ +  S LPS+     L ++ + F+D +
Sbjct: 70  SLNIVEYIDETWNSSAPSILPSHPYDRALARFWSDFVDNK 109


>At1g59670.1 68414.m06711 glutathione S-transferase, putative
           similar to glutathione S-transferase GB:AAF29773
           GI:6856103 from [Gossypium hirsutum]
          Length = 233

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +2

Query: 29  LAVSLDIAKAFDRVWHRALLSKLPSYGIPEGLCKWIASFLDGR 157
           + VSL+I +  D  W+ +  S LPS+     L ++ + F+D +
Sbjct: 67  VCVSLNIVEYIDETWNSSGSSILPSHPYDRALARFWSVFVDDK 109


>At1g56360.1 68414.m06481 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 466

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/35 (40%), Positives = 15/35 (42%), Gaps = 4/35 (11%)
 Frame = +2

Query: 548 WDTWGRHFERCPVSESF----GRQSQVGVQNAGSP 640
           WDTWGR  E C   + F    G      V N G P
Sbjct: 207 WDTWGRFMEPCAAYQPFIFAAGNHEIDFVPNIGEP 241


>At1g31500.1 68414.m03857 endonuclease/exonuclease/phosphatase
           family protein low similarity to SP|P31384
           Glucose-repressible alcohol dehydrogenase
           transcriptional effector (Carbon catabolite repressor
           protein 4) {Saccharomyces cerevisiae}; contains Pfam
           profile PF03372: Endonuclease/Exonuclease/phosphatase
           family
          Length = 388

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 378 F*SSLLHHAPRETLMADISRIPRAVI 301
           F S+ LHH PR  L+   SR+ R VI
Sbjct: 2   FSSTTLHHLPRPNLLLPSSRVCRKVI 27


>At1g61590.1 68414.m06940 protein kinase, putative contains protein
           kinase domain, Pfam:PF00069; similar to serine/threonine
           protein kinase gi|1066501|gb|AAA81538
          Length = 424

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = -3

Query: 606 CLPNDSET--GHRSKCRPQVSQYSQKVAGILLGIARHDKGVLLRSERANL 463
           C   D +T  G+ S+CRP  S++S+   G L    R     L RS  A +
Sbjct: 23  CCSVDDQTVFGNLSRCRPSRSEFSKNHLGPLPSFRRLSFADLSRSSSARI 72


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,831,433
Number of Sequences: 28952
Number of extensions: 358317
Number of successful extensions: 1114
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)