Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20591
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch...   132   5e-32
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    28   1.5  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    26   4.5  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    26   4.5  
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex...    26   4.5  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   6.0  
SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase |...    26   6.0  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    26   6.0  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   7.9  
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    25   7.9  
SPBC3B9.03 |||signal recognition particle receptor alpha subunit...    25   7.9  

>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 382

 Score =  132 bits (319), Expect = 5e-32
 Identities = 56/84 (66%), Positives = 73/84 (86%)
 Frame = +1

Query: 256 GEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHENRNDE 435
           GEIT+++ +DYQKV+R T+K IGYDDS KGFDYKTC+V++A++QQSP+IA G+H  +  E
Sbjct: 56  GEITTRSQIDYQKVIRNTIKSIGYDDSEKGFDYKTCNVLVAIEQQSPDIAQGLHYEKALE 115

Query: 436 EVGAGDQGLMFGYATDETEECMPL 507
           E+GAGDQG+MFGYATDET E +PL
Sbjct: 116 ELGAGDQGIMFGYATDETPEKLPL 139



 Score = 89.0 bits (211), Expect = 6e-19
 Identities = 40/53 (75%), Positives = 46/53 (86%)
 Frame = +2

Query: 104 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLLAK 262
           FLFTSESVGEGHPDK+CDQISDAILDA L  DP +KVACET +KTGMV++  +
Sbjct: 5   FLFTSESVGEGHPDKICDQISDAILDACLKDDPFSKVACETASKTGMVMVFGE 57



 Score = 74.9 bits (176), Expect = 1e-14
 Identities = 33/63 (52%), Positives = 45/63 (71%)
 Frame = +3

Query: 510 VVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVVSLQHSEKI 689
           ++LAHKLN  ++  RR+G   W RPD+KTQVT EY    GA +P+RV T+VVS QH++ I
Sbjct: 141 ILLAHKLNAAMSVARRDGSLPWLRPDTKTQVTIEYEEENGAVIPRRVDTIVVSAQHADSI 200

Query: 690 TLE 698
           + E
Sbjct: 201 STE 203


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -1

Query: 656 SMNSLWDCCTTSKYIFASNLCF*IWSCPPK--FSISPELCNFL 534
           S +SL D  TT ++IF+ NL   +W   P    +I P+  N L
Sbjct: 244 SRDSLSDSMTTPEFIFSHNLVLQLWKYAPTTLLNIIPQFENEL 286


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
            Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 154  RPNKRRYSRRAPESGSGRKSCM 219
            +P KR+Y+R+AP   S R++ +
Sbjct: 1211 QPTKRKYNRKAPTKSSTRQTTL 1232


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
 Frame = +2

Query: 8   WANSKFRMPETSKMNGYAKTNGH-SYDMEDGSVFLFTSESVGEGHPDKMCDQISDAIL 178
           W + K  M   S       T    S+D E  S+F   S+SV E      CD+ SD  L
Sbjct: 633 WPDEKKAMESHSTRAHRRSTESKISFDSEADSLFEEASKSVPEDPVSVFCDEESDESL 690


>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
           subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 342

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 140 PDKMCDQISDAILDA-HLNQDPDAKVACETITKTGM 244
           P K  ++  D ++ + H N DPDAK+A   ++K  M
Sbjct: 180 PPKEIEKTVDHVIQSEHCNIDPDAKMAVLRLSKGDM 215


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 23/66 (34%), Positives = 31/66 (46%)
 Frame = -1

Query: 491 SVSSVA*PNIKPWSPAPTSSSFLFSCTPAAMFGDCWSSASITLHVL*SKPLDESS*PICL 312
           SVSS +       +P  TSSS+L S +  +      SS+S TL    S  L  SS P   
Sbjct: 188 SVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLT---SSSLSTSSIPSTS 244

Query: 311 TVSRTT 294
           + S +T
Sbjct: 245 SSSSST 250


>SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 266

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 271 KANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQ 390
           + N DY K+  E VK  G D+       K C  ++ L Q+
Sbjct: 106 EVNEDYAKIAYELVKLAGLDEIVTIMIGKACDSLVELQQK 145


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 18/65 (27%), Positives = 25/65 (38%)
 Frame = +2

Query: 464 CSVMQQMRQKNACR*CSACTQTQSENCRAQAKWRILVGKTRFKNTGYLRICICWWCNSPT 643
           C  +Q  R    CR   A       + R + ++      T   N GYLR C+ +  NSP 
Sbjct: 215 CDAVQSSRN-GICRHVDARAMVNLNHSRWERRYYARQ-VTYLHNNGYLRKCLTFVPNSPE 272

Query: 644 ESSYC 658
               C
Sbjct: 273 RCIRC 277


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 160 LVAHFVWMTLANRFRCEQKY*SIFHII 80
           L+ HFVW +      CE+K+ S  H++
Sbjct: 394 LLLHFVWKSALICVLCERKFQSWGHVV 420


>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -3

Query: 375 EHHTACLVIKAFGRIIITNMFDRFAHNFLIIHVSFGCDFANK 250
           EH+  C+   + G ++++   DR    + I  +S  C F  K
Sbjct: 101 EHNIPCITFNSSGTLLLSGSIDRSLQIWDITSLSCLCKFYTK 142


>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -2

Query: 406 QQCLVIVGLVRASHCMSCNQSLWTNHHNQYV*PFRAQLFD 287
           Q  +V V + +   CM+ +QSL  + HN ++  F+ +L D
Sbjct: 61  QYSIVFVVVFQDLKCMAYSQSLLNSAHNIFLNLFKEKLED 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,223,123
Number of Sequences: 5004
Number of extensions: 71991
Number of successful extensions: 222
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)