Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20591
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0264 + 2030080-2031270 110 1e-24
01_02_0051 - 10655867-10657057 108 4e-24
01_03_0090 - 12347165-12348349 105 3e-23
12_02_0655 + 21588662-21589051 31 0.88
05_04_0384 - 20809397-20811547 31 1.2
02_01_0375 + 2712289-2712957 30 1.5
04_04_0443 - 25253425-25253679,25254072-25254131,25254259-252543... 30 2.0
03_05_0640 - 26326832-26327166,26327295-26327529,26327665-263279... 29 3.5
06_03_1153 - 28047125-28047751 28 6.2
02_05_0016 - 25004075-25005821,25006394-25006527 28 6.2
>05_01_0264 + 2030080-2031270
Length = 396
Score = 110 bits (264), Expect = 1e-24
Identities = 53/92 (57%), Positives = 68/92 (73%), Gaps = 2/92 (2%)
Frame = +1
Query: 256 GEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHEN--RN 429
GEIT+KANVDY+K+VRET ++IG+ + G D C V++ ++QQSP+IA GVH + +
Sbjct: 58 GEITTKANVDYEKIVRETCRNIGFVSADVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKR 117
Query: 430 DEEVGAGDQGLMFGYATDETEECMPLM*CLHT 525
EE+GAGDQG MFGYATDET E MPL L T
Sbjct: 118 PEEIGAGDQGHMFGYATDETPELMPLSHVLAT 149
Score = 89.0 bits (211), Expect = 3e-18
Identities = 38/53 (71%), Positives = 46/53 (86%)
Frame = +2
Query: 104 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLLAK 262
FLFTSESV EGHPDK+CDQ+SDA+LDA L +DPD+KVACET TKT MV++ +
Sbjct: 7 FLFTSESVNEGHPDKLCDQVSDAVLDACLAEDPDSKVACETCTKTNMVMVFGE 59
Score = 73.7 bits (173), Expect = 1e-13
Identities = 34/60 (56%), Positives = 41/60 (68%)
Frame = +3
Query: 513 VLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVVSLQHSEKIT 692
VLA KL ++ E+R+NG W RPD KTQVT EY GA VP RVHTV++S QH E +T
Sbjct: 146 VLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYRNESGARVPVRVHTVLISTQHDETVT 205
>01_02_0051 - 10655867-10657057
Length = 396
Score = 108 bits (260), Expect = 4e-24
Identities = 52/92 (56%), Positives = 68/92 (73%), Gaps = 2/92 (2%)
Frame = +1
Query: 256 GEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHEN--RN 429
GEIT+KANVDY+K+VR+T + IG+ + G D + C V++ ++QQSP+IA GVH + +
Sbjct: 58 GEITTKANVDYEKIVRDTCRGIGFVSNDVGLDAEHCKVLVNIEQQSPDIAQGVHGHFTKR 117
Query: 430 DEEVGAGDQGLMFGYATDETEECMPLM*CLHT 525
EE+GAGDQG MFGYATDET E MPL L T
Sbjct: 118 PEEIGAGDQGHMFGYATDETPELMPLSHVLAT 149
Score = 89.0 bits (211), Expect = 3e-18
Identities = 39/59 (66%), Positives = 48/59 (81%)
Frame = +2
Query: 86 MEDGSVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLLAK 262
M + FLFTSESV EGHPDK+CDQISDA+LDA L +DP++KVACET TKT MV++ +
Sbjct: 1 MAEVDTFLFTSESVNEGHPDKLCDQISDAVLDACLAEDPESKVACETCTKTNMVMVFGE 59
Score = 73.7 bits (173), Expect = 1e-13
Identities = 34/60 (56%), Positives = 41/60 (68%)
Frame = +3
Query: 513 VLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVVSLQHSEKIT 692
VLA KL ++ E+R+NG W RPD KTQVT EY GA VP RVHTV++S QH E +T
Sbjct: 146 VLATKLGARLTEVRKNGACAWLRPDGKTQVTVEYQNDNGAMVPLRVHTVLISTQHDETVT 205
>01_03_0090 - 12347165-12348349
Length = 394
Score = 105 bits (252), Expect = 3e-23
Identities = 51/92 (55%), Positives = 65/92 (70%), Gaps = 2/92 (2%)
Frame = +1
Query: 256 GEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHEN--RN 429
GEIT+KA VDY+K+VR+T + IG+ G D C V++ ++QQSP+IA GVH + +
Sbjct: 57 GEITTKATVDYEKIVRDTCRGIGFVSDDVGLDADRCKVLVNIEQQSPDIAQGVHGHFTKR 116
Query: 430 DEEVGAGDQGLMFGYATDETEECMPLM*CLHT 525
EE+GAGDQG MFGYATDET E MPL L T
Sbjct: 117 PEEIGAGDQGHMFGYATDETPELMPLSHVLAT 148
Score = 92.3 bits (219), Expect = 3e-19
Identities = 42/65 (64%), Positives = 51/65 (78%)
Frame = +2
Query: 104 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLLAKSHPKLTW 283
FLFTSESV EGHPDK+CDQ+SDA+LDA L QDPD+KVACET TKT MV++ + K T
Sbjct: 6 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKATV 65
Query: 284 IIKKL 298
+K+
Sbjct: 66 DYEKI 70
Score = 74.9 bits (176), Expect = 5e-14
Identities = 34/60 (56%), Positives = 42/60 (70%)
Frame = +3
Query: 513 VLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVVSLQHSEKIT 692
VLA KL ++ E+R+NG W RPD KTQVT EY+ GA VP RVHTV++S QH E +T
Sbjct: 145 VLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYLNDAGAMVPVRVHTVLISTQHDETVT 204
>12_02_0655 + 21588662-21589051
Length = 129
Score = 31.1 bits (67), Expect = 0.88
Identities = 20/53 (37%), Positives = 24/53 (45%)
Frame = +1
Query: 52 WIRENQRTQL*YGRWISIFVHIGICWRGSSRQNVRPNKRRYSRRAPESGSGRK 210
WI QR ++ G W RGS V P +RR SRR P SG R+
Sbjct: 27 WIGGRQRPRMWIGDWREE--------RGSVAVGVAPGRRRESRRRPGSGEARR 71
>05_04_0384 - 20809397-20811547
Length = 716
Score = 30.7 bits (66), Expect = 1.2
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Frame = +1
Query: 310 VKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHENRNDEE--VGAGDQGLMFGYATD 483
++HI +++ KG KTC + +A S N G+H R E+ + D+ +F YA D
Sbjct: 525 LRHI--EENVKGA-VKTCVMTVAKKTLSTNSTGGLHVARFCEKDLLSEIDREAVFAYADD 581
Query: 484 ETEECMPLM*CLHTNSIRKLQSSGEME 564
PLM L + + + ++G E
Sbjct: 582 PCSANYPLMKKLRSVLVERALANGAAE 608
>02_01_0375 + 2712289-2712957
Length = 222
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 498 HAVDVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYV 617
H VV +L++ + +++G WW RPDS EY+
Sbjct: 160 HVKYVVYWGRLSKALVWWKQSGNNWWPRPDSDLGEDFEYI 199
>04_04_0443 -
25253425-25253679,25254072-25254131,25254259-25254365,
25256594-25256667,25256865-25256998,25257233-25257304,
25257453-25257522,25257602-25257675,25258403-25258574,
25258910-25258934,25259358-25259517,25259730-25259788,
25259908-25260079
Length = 477
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = -2
Query: 604 VTCVFESGLAHQNSPFRLSSAIF*LSLCASTTSTACILLSHLLHNRTSSPGLLPQLPR 431
+TCV + L H S LSS L + + T C+ + +H + P L+PQLP+
Sbjct: 388 ITCVNQMSLEHSES---LSS----LQVAQAQTRILCMKEARDMHVASEMPPLIPQLPK 438
>03_05_0640 - 26326832-26327166,26327295-26327529,26327665-26327908,
26328389-26328507,26328860-26329050,26329133-26329220,
26331653-26331715,26331816-26333944,26334084-26334186
Length = 1168
Score = 29.1 bits (62), Expect = 3.5
Identities = 27/82 (32%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
Frame = +2
Query: 89 EDGSVFLFTSESVGEGHPDKM---CDQISDAILDAHLNQDPDAKVACETITKTGMVLLLA 259
+DGS +LFTS+ E HP M D+ S+ IL E I K G L
Sbjct: 765 QDGSEWLFTSKRTDESHPFTMHVNFDKFSEDILVGDELVIDGGMATFEVIEKVGNDLRCK 824
Query: 260 KSHPKLTWIIKKLCAKRSNILV 325
+ P L KL R+ LV
Sbjct: 825 CTDPGLLLPRAKLSFWRNGKLV 846
>06_03_1153 - 28047125-28047751
Length = 208
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +1
Query: 106 FVHIGICWRG-SSRQNVRPNKRRYSRRAPESGSGRKSCM*NHN*NRYGA 249
+++ CW+ ++ P Y R P +G GR +H+ + YGA
Sbjct: 106 YIYRSQCWKSLKKKKKPPPPLPLYRPRPPPAGDGRPDVTVHHHHHHYGA 154
>02_05_0016 - 25004075-25005821,25006394-25006527
Length = 626
Score = 28.3 bits (60), Expect = 6.2
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = +1
Query: 355 KTCSVMLALDQQSPNIAAGVHENRNDEE--VGAGDQGLMFGYATDETEECMPLM*CLHTN 528
K C + +A S N G+H R E+ + A D+ +F YA D PLM L
Sbjct: 447 KNCVMQVAKKSLSMNHMGGLHIARFCEKDLLTAIDREAVFAYADDPCSANYPLMQKLRAV 506
Query: 529 SIRKLQSSGEME 564
I ++G+ E
Sbjct: 507 LIEHALANGDAE 518
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,215,686
Number of Sequences: 37544
Number of extensions: 485402
Number of successful extensions: 1325
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1322
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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