Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20591
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47946| Best HMM Match : No HMM Matches (HMM E-Value=.)             148   5e-36
SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.)             137   7e-33
SB_11655| Best HMM Match : No HMM Matches (HMM E-Value=.)             133   1e-31
SB_46129| Best HMM Match : No HMM Matches (HMM E-Value=.)              99   4e-21
SB_53305| Best HMM Match : S-AdoMet_synt_N (HMM E-Value=0.0056)        85   7e-17
SB_16847| Best HMM Match : S-AdoMet_synt_M (HMM E-Value=0)             49   4e-06
SB_15158| Best HMM Match : Cadherin (HMM E-Value=7.5e-23)              32   0.51 
SB_17763| Best HMM Match : IBN_N (HMM E-Value=3.4e-20)                 31   0.90 
SB_31747| Best HMM Match : Myotub-related (HMM E-Value=0)              31   0.90 
SB_2549| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.8  
SB_14617| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  

>SB_47946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 460

 Score =  148 bits (358), Expect = 5e-36
 Identities = 66/84 (78%), Positives = 77/84 (91%)
 Frame = +1

Query: 256 GEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHENRNDE 435
           GEITS ANVDYQKVVR+T+K IGYDDSSKGFDYKTC+V+ A++QQSP+IA GVH  R+DE
Sbjct: 13  GEITSLANVDYQKVVRDTIKQIGYDDSSKGFDYKTCTVLQAIEQQSPDIAQGVHIGRSDE 72

Query: 436 EVGAGDQGLMFGYATDETEECMPL 507
           ++GAGDQGLMFGYATDET+E MPL
Sbjct: 73  DLGAGDQGLMFGYATDETDELMPL 96



 Score = 88.2 bits (209), Expect = 6e-18
 Identities = 39/63 (61%), Positives = 47/63 (74%)
 Frame = +3

Query: 510 VVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVVSLQHSEKI 689
           VVLAH LN+++A+ RRNG   W RPDSKTQVT EY F GG  VP RVHT+V+S+QH   I
Sbjct: 98  VVLAHGLNKRLADCRRNGSLPWVRPDSKTQVTVEYKFQGGKAVPLRVHTIVISVQHDPNI 157

Query: 690 TLE 698
            L+
Sbjct: 158 ELD 160


>SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score =  137 bits (332), Expect = 7e-33
 Identities = 63/84 (75%), Positives = 72/84 (85%)
 Frame = +1

Query: 256 GEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHENRNDE 435
           GEITS A VDYQ VVR+ +K IGYDDS KGFDYKTC+V++AL+QQS +IA GVH  R +E
Sbjct: 82  GEITSNAVVDYQSVVRQCIKDIGYDDSEKGFDYKTCNVLVALEQQSVDIAHGVHVGREEE 141

Query: 436 EVGAGDQGLMFGYATDETEECMPL 507
           +VGAGDQGLMFGYATDETEE MPL
Sbjct: 142 DVGAGDQGLMFGYATDETEELMPL 165



 Score =  102 bits (245), Expect = 2e-22
 Identities = 45/52 (86%), Positives = 49/52 (94%)
 Frame = +2

Query: 98  SVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLL 253
           + FLFTSESVGEGHPDKMCDQISDAILDAHL QDP+AKVACET+ KTGM+LL
Sbjct: 29  NTFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVACETVAKTGMILL 80



 Score = 92.3 bits (219), Expect = 3e-19
 Identities = 41/63 (65%), Positives = 49/63 (77%)
 Frame = +3

Query: 510 VVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVVSLQHSEKI 689
           VVLAHK+NQK+AE RR+G   WARPDSKTQVT EY F  G  +P RVHT+V+S+QH   I
Sbjct: 167 VVLAHKMNQKLAEYRRDGTLPWARPDSKTQVTVEYKFEHGRAIPLRVHTIVISVQHDPTI 226

Query: 690 TLE 698
           T+E
Sbjct: 227 TME 229


>SB_11655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score =  133 bits (322), Expect = 1e-31
 Identities = 61/84 (72%), Positives = 69/84 (82%)
 Frame = +1

Query: 256 GEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHENRNDE 435
           GEITS A VDYQ VVR T++ IGY+DSS GFDYKTCSV+LA+ +Q   IA  VH NR D+
Sbjct: 103 GEITSNARVDYQAVVRNTIRDIGYNDSSTGFDYKTCSVLLAIQEQVAEIAQTVHLNRRDD 162

Query: 436 EVGAGDQGLMFGYATDETEECMPL 507
           E+GAGDQGLMFGYATDETEE MPL
Sbjct: 163 EIGAGDQGLMFGYATDETEELMPL 186



 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 45/61 (73%), Positives = 48/61 (78%)
 Frame = +2

Query: 80  YDMEDGSVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLLA 259
           Y   D   FLFTSESV EGH DKMCDQISDA+LDAHL QDP AKVACET TKTG+VLL  
Sbjct: 44  YSTSDCDNFLFTSESVNEGHSDKMCDQISDAVLDAHLEQDPYAKVACETATKTGLVLLFG 103

Query: 260 K 262
           +
Sbjct: 104 E 104



 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 30/62 (48%), Positives = 41/62 (66%)
 Frame = +3

Query: 513 VLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVVSLQHSEKIT 692
           VLAHKL  ++AE R+     W  PD KTQVT +Y    GA +P+RVHTV++S QH+  + 
Sbjct: 189 VLAHKLCARLAECRKGKILPWLLPDGKTQVTVDYRLERGACIPERVHTVLISTQHTPDVG 248

Query: 693 LE 698
           +E
Sbjct: 249 IE 250


>SB_46129| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 98.7 bits (235), Expect = 4e-21
 Identities = 42/52 (80%), Positives = 49/52 (94%)
 Frame = +2

Query: 98  SVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLL 253
           + FLFTSESVGEGHPDKMCDQISDAILDAHL QDP+AKVACE++ KTGM+++
Sbjct: 9   NTFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVACESVAKTGMIVV 60



 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 25/29 (86%), Positives = 27/29 (93%)
 Frame = +1

Query: 256 GEITSKANVDYQKVVRETVKHIGYDDSSK 342
           GEITS ANVDYQKVVR+T+K IGYDDSSK
Sbjct: 62  GEITSLANVDYQKVVRDTIKQIGYDDSSK 90


>SB_53305| Best HMM Match : S-AdoMet_synt_N (HMM E-Value=0.0056)
          Length = 70

 Score = 84.6 bits (200), Expect = 7e-17
 Identities = 37/41 (90%), Positives = 39/41 (95%)
 Frame = +2

Query: 98  SVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVAC 220
           + FLFTSESVGEGHPDKMCDQISDAILDAHL QDP+AKVAC
Sbjct: 29  NTFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVAC 69


>SB_16847| Best HMM Match : S-AdoMet_synt_M (HMM E-Value=0)
          Length = 192

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 27/63 (42%), Positives = 39/63 (61%)
 Frame = +3

Query: 510 VVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVVSLQHSEKI 689
           V  AH+L ++ +ELRRNG   W RPD+K+QVT  +   G +    +V  VV+S QH   I
Sbjct: 34  VYYAHRLVERQSELRRNGTLPWLRPDAKSQVTINW--EGDS---PKVDAVVLSTQHDPSI 88

Query: 690 TLE 698
           +L+
Sbjct: 89  SLD 91



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 18/24 (75%), Positives = 21/24 (87%)
 Frame = +1

Query: 433 EEVGAGDQGLMFGYATDETEECMP 504
           E+ GAGDQGLMFGYAT+ET+  MP
Sbjct: 8   EDQGAGDQGLMFGYATNETDSLMP 31


>SB_15158| Best HMM Match : Cadherin (HMM E-Value=7.5e-23)
          Length = 390

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +1

Query: 238 RYGAFVGEITSKANVDYQKVVRETV---KHIGYDDSSKGFDYK 357
           +  +  GEITS  N+D +K+    +   K I YD    G+DY+
Sbjct: 97  KINSVTGEITSNVNIDREKLPGSNLLEFKAIAYDAKGAGYDYR 139


>SB_17763| Best HMM Match : IBN_N (HMM E-Value=3.4e-20)
          Length = 681

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 478 LHNRTSSPGLLPQLPRHFCSHAPQQQCLVIVGL 380
           L N T+ P + PQ P H  SHA +   ++I G+
Sbjct: 99  LGNETARPAIAPQEPEHLVSHANKILTVIIQGM 131


>SB_31747| Best HMM Match : Myotub-related (HMM E-Value=0)
          Length = 550

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = -3

Query: 291 LIIHVSFGCDFANKSTIPVLVMV----SHATFASGS*FRCASRIASLIWSHILSG 139
           L  H++F C      T P L ++    S +  A  + FRC+ R  S++W H+ +G
Sbjct: 263 LTCHLNFACRVCR--TYPRLHVIPSSISDSDLAKVASFRCSGRFPSIVWRHMTNG 315


>SB_2549| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1155

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +2

Query: 29  MPETSKMNGYAKTNGHSYDMEDGSVFLFTSESVGE-GHPDKMCDQISDAILDAHLNQDPD 205
           MP      G +K N  + D  D   +L   +S+    + D++C   +  I  AHL QDPD
Sbjct: 196 MPYGGGKRGKSKKNSSTLDTGDLETWLKGRKSITRVRNHDELCAARALVIGMAHLTQDPD 255


>SB_14617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 598

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +2

Query: 29  MPETSKMNGYAKTNGHSYDMEDGSVFLFTSESVGE-GHPDKMCDQISDAILDAHLNQDPD 205
           MP  +   G +K N  + D  D   +L    S+    + D++C   +  I  AHL +DPD
Sbjct: 241 MPFGAGKRGKSKKNSSTLDTGDLETWLKGKRSITRVRNHDELCAARATVIGMAHLTKDPD 300


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,787,299
Number of Sequences: 59808
Number of extensions: 580372
Number of successful extensions: 1595
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1594
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)