Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20590
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr 2...    53   4e-08
SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       27   1.7  
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce...    27   3.0  
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc...    26   5.3  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    26   5.3  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    26   5.3  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    26   5.3  
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      25   7.0  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    25   7.0  
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    25   9.2  
SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha sub...    25   9.2  

>SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 117

 Score = 52.8 bits (121), Expect = 4e-08
 Identities = 26/41 (63%), Positives = 27/41 (65%)
 Frame = +1

Query: 130 KGENEHINLKVLGQDNAIVQFKIKKHTPLRKLMHAYCDRAG 252
           K   EHINLKV+GQDN  V FKIKK T   KLM  YC R G
Sbjct: 30  KPSTEHINLKVVGQDNNEVFFKIKKTTEFSKLMKIYCARQG 70



 Score = 42.7 bits (96), Expect = 4e-05
 Identities = 19/40 (47%), Positives = 25/40 (62%)
 Frame = +3

Query: 255 SMQVVRFRFDGQPINGNDTPTSLEMEEGDTIEVYQQQTGG 374
           SM  +RF  DG+ I  + TP  L+ME+GD IE   +Q GG
Sbjct: 72  SMNSLRFLVDGERIRPDQTPAELDMEDGDQIEAVLEQLGG 111


>SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 111

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = -3

Query: 620 EVTYSIWYTYNDL---TTSNLRRIMLCVARLCYYVSQNYFQHFYRYK 489
           E+T+ ++ +   L     +  RRI+ C A LC  +   Y+ H+  ++
Sbjct: 27  EITFKVYISIRRLLIVVITLYRRIVECCASLCSLIFSKYYLHYKTFR 73


>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 267 VRFRFDGQPINGNDTPTSLEMEEGDTIEV 353
           +R  F+G+ ++ ND   S E+E+ D + V
Sbjct: 375 IRLEFEGEWLDPNDQVQSTELEDEDQVSV 403


>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
           Uap56|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
 Frame = +1

Query: 19  CHLRVRL*KQIPNQFVN-SQFCINS----F*NHINLKM---ADEKKGENEHINLKVLGQD 174
           CH R  L  QI N++   S++  +     F   IN+K    A + K ++ HI +   G+ 
Sbjct: 126 CHTR-ELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIVVATPGRL 184

Query: 175 NAIVQFKIKKHTPLRKLMHAYCDR 246
           NA+V+ KI K   ++  +   CD+
Sbjct: 185 NALVREKILKVNSVKHFVLDECDK 208


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 228 HQFPERCVFLYFELYNCV 175
           H+FP  C+F  F  YNC+
Sbjct: 533 HRFP--CIFTSFSCYNCI 548


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 195  FELYNCVILT*YFQINVFVFSLLFI 121
            +E+YN +I + Y  INV  F+ LFI
Sbjct: 1307 YEIYNALIRSIYRFINVEAFNSLFI 1331


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 228 HQFPERCVFLYFELYNCV 175
           H+FP  C+F  F  YNC+
Sbjct: 533 HRFP--CIFTSFSCYNCI 548


>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +2

Query: 74  SFVLIVSRTTLISKWLMKRREKTNTLI*KY*VKITQLY 187
           +F+   +  +LIS +L+K  EK+N L  K+ V I  LY
Sbjct: 341 TFIFQENVVSLISGFLLKEYEKSNFLDSKFYVLIDFLY 378


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = +1

Query: 157 KVLGQDNAIVQFKIKKHTPLRKLMHAY 237
           K+ G+  ++ + K+KK T + +++H Y
Sbjct: 349 KIQGEIESLEKLKVKKSTMINEIVHRY 375


>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 65  SIHSFVLIVSRTTLISKWLMKRREKTNTL 151
           +++ FV++V    L S W+M +  KT  L
Sbjct: 496 AVYIFVIVVMTLPLSSLWIMYQHSKTPNL 524


>SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha
           subunit Tfg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 490

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 26  YAFVCENRYQISLSIHSFVLIVSRTTLISKWLMKRREKTN 145
           Y F   N +Q +LSI      +++ T I +W MK+  + N
Sbjct: 193 YRFNQRNNFQ-TLSIDEAEAKMNKKTPIPRWFMKKESEEN 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,507,689
Number of Sequences: 5004
Number of extensions: 49500
Number of successful extensions: 109
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)