Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20590
(640 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1811 - 40055106-40055174,40055291-40055440,40056696-40056782 53 2e-07
01_06_1812 - 40057904-40057972,40058071-40058220,40059449-40059532 52 3e-07
07_03_0990 + 23173868-23174200 40 0.001
07_03_0989 + 23161020-23161412 40 0.001
07_03_0988 + 23160028-23160360 36 0.021
01_04_0034 + 15318509-15319567 32 0.44
01_05_0651 + 23930455-23930457,23930543-23930636,23930764-239308... 30 1.8
07_03_0992 + 23180165-23180720,23180732-23181162 29 4.1
07_03_0419 - 17993478-17993777,17994045-17994195,17994799-179950... 27 9.5
>01_06_1811 - 40055106-40055174,40055291-40055440,40056696-40056782
Length = 101
Score = 53.2 bits (122), Expect = 2e-07
Identities = 28/53 (52%), Positives = 34/53 (64%), Gaps = 5/53 (9%)
Frame = +1
Query: 121 DEKK-----GENEHINLKVLGQDNAIVQFKIKKHTPLRKLMHAYCDRAGLQCR 264
DEKK G HINLKV GQD V F+IK+ T L+KLM+AYCDR + +
Sbjct: 8 DEKKPAGGEGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDIK 60
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/36 (50%), Positives = 23/36 (63%)
Frame = +3
Query: 267 VRFRFDGQPINGNDTPTSLEMEEGDTIEVYQQQTGG 374
+ F FDG+ +N TP LEME+GD I+ QTGG
Sbjct: 62 IAFLFDGRRLNAEQTPDQLEMEDGDEIDAMLHQTGG 97
>01_06_1812 - 40057904-40057972,40058071-40058220,40059449-40059532
Length = 100
Score = 52.4 bits (120), Expect = 3e-07
Identities = 24/39 (61%), Positives = 29/39 (74%)
Frame = +1
Query: 130 KGENEHINLKVLGQDNAIVQFKIKKHTPLRKLMHAYCDR 246
+G HINLKV GQD V F+IK+ T L+KLM+AYCDR
Sbjct: 15 EGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDR 53
Score = 46.0 bits (104), Expect = 3e-05
Identities = 19/39 (48%), Positives = 24/39 (61%)
Frame = +3
Query: 258 MQVVRFRFDGQPINGNDTPTSLEMEEGDTIEVYQQQTGG 374
M + F FDG+ + G TP LEME+GD I+ QTGG
Sbjct: 58 MNAIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 96
>07_03_0990 + 23173868-23174200
Length = 110
Score = 40.3 bits (90), Expect = 0.001
Identities = 14/37 (37%), Positives = 26/37 (70%)
Frame = +3
Query: 270 RFRFDGQPINGNDTPTSLEMEEGDTIEVYQQQTGGVS 380
RF +DG+ ++G TP L+ME+GD ++ +++ GG +
Sbjct: 74 RFLYDGRRLSGWQTPAELDMEDGDEVDFFEELIGGAA 110
>07_03_0989 + 23161020-23161412
Length = 130
Score = 40.3 bits (90), Expect = 0.001
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +3
Query: 270 RFRFDGQPINGNDTPTSLEMEEGDTIEVYQQQTGGVS 380
RF FDG+ + G TP L+ME+GD + +++ GG +
Sbjct: 82 RFLFDGRRLRGWQTPAELQMEDGDEVNFFEELIGGAA 118
>07_03_0988 + 23160028-23160360
Length = 110
Score = 36.3 bits (80), Expect = 0.021
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +3
Query: 273 FRFDGQPINGNDTPTSLEMEEGDTIEVYQQQTGG 374
F FDG + G+ TP LEM +GDT++ + GG
Sbjct: 64 FLFDGIRLKGDMTPMGLEMVDGDTVDFFPVMIGG 97
>01_04_0034 + 15318509-15319567
Length = 352
Score = 31.9 bits (69), Expect = 0.44
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 279 FDGQPINGNDTPTSLEMEEGDTIEVYQQQTG 371
++G+ + + TP L++E+GDTI +Q G
Sbjct: 322 YEGRRVQDSQTPDDLKLEDGDTIHAIARQVG 352
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 273 FRFDGQPINGNDTPTSLEMEEGDTIEVYQQQT 368
F G+ + GN TP +ME+GD + + T
Sbjct: 75 FMHYGRCVTGNRTPADYDMEDGDEVSFFPDGT 106
Score = 28.7 bits (61), Expect = 4.1
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 279 FDGQPINGNDTPTSLEMEEGDTIEV 353
+ G+ + G +TP EME+GD + +
Sbjct: 242 YGGRQVGGEETPADYEMEDGDQLRL 266
>01_05_0651 +
23930455-23930457,23930543-23930636,23930764-23930849,
23930930-23931108,23932275-23932482,23932808-23932975
Length = 245
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 255 SMQVVRFRFDGQPINGNDTPTSLEMEEGDTIEV 353
S+ + F FDG ++ TP L +E+ D +EV
Sbjct: 208 SVADLTFAFDGDKVDAESTPEDLGLEDEDMVEV 240
>07_03_0992 + 23180165-23180720,23180732-23181162
Length = 328
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 270 RFRFDGQPINGNDTPTSLEMEEGDTIEV 353
RF FDG+ + G+ TP L E+ D I++
Sbjct: 298 RFLFDGRFVLGSQTPDDLAQEDVDMIDL 325
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 279 FDGQPINGNDTPTSLEMEEGDTIE 350
+ G+ + G TP EME+GD I+
Sbjct: 223 YGGKTVEGEKTPADCEMEDGDQIK 246
>07_03_0419 -
17993478-17993777,17994045-17994195,17994799-17995036,
17995133-17995343,17995440-17995618,17995735-17995833,
17996646-17997531
Length = 687
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1
Query: 211 PLRKLMHAYCDRAGLQCR*CDSDLMGN 291
PL LM D +G CR C DL+GN
Sbjct: 209 PLFSLMQCTPDMSGGDCRQCLQDLVGN 235
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,316,368
Number of Sequences: 37544
Number of extensions: 291628
Number of successful extensions: 503
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -