Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20590
         (640 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X99600-1|CAA67914.1|   91|Caenorhabditis elegans ubiquitin-like ...    54   9e-08
U94830-1|AAB67608.1|   91|Caenorhabditis elegans ubiquitin-like ...    54   9e-08
AF043701-6|AAK18969.1|   91|Caenorhabditis elegans Sumo (ubiquit...    54   9e-08

>X99600-1|CAA67914.1|   91|Caenorhabditis elegans ubiquitin-like
           protein protein.
          Length = 91

 Score = 54.0 bits (124), Expect = 9e-08
 Identities = 23/36 (63%), Positives = 29/36 (80%)
 Frame = +3

Query: 267 VRFRFDGQPINGNDTPTSLEMEEGDTIEVYQQQTGG 374
           +RF FDG+ IN +DTP +LEME+ D IEVYQ+Q GG
Sbjct: 55  LRFLFDGRRINDDDTPKTLEMEDDDVIEVYQEQLGG 90



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 22/50 (44%), Positives = 34/50 (68%), Gaps = 3/50 (6%)
 Frame = +1

Query: 115 MADE--KKGEN-EHINLKVLGQDNAIVQFKIKKHTPLRKLMHAYCDRAGL 255
           MAD+  + G+N E+I +KV+GQD+  V F++K  T + KL  +Y DR G+
Sbjct: 1   MADDAAQAGDNAEYIKIKVVGQDSNEVHFRVKYGTSMAKLKKSYADRTGV 50


>U94830-1|AAB67608.1|   91|Caenorhabditis elegans ubiquitin-like
           protein protein.
          Length = 91

 Score = 54.0 bits (124), Expect = 9e-08
 Identities = 23/36 (63%), Positives = 29/36 (80%)
 Frame = +3

Query: 267 VRFRFDGQPINGNDTPTSLEMEEGDTIEVYQQQTGG 374
           +RF FDG+ IN +DTP +LEME+ D IEVYQ+Q GG
Sbjct: 55  LRFLFDGRRINDDDTPKTLEMEDDDVIEVYQEQLGG 90



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 22/50 (44%), Positives = 34/50 (68%), Gaps = 3/50 (6%)
 Frame = +1

Query: 115 MADE--KKGEN-EHINLKVLGQDNAIVQFKIKKHTPLRKLMHAYCDRAGL 255
           MAD+  + G+N E+I +KV+GQD+  V F++K  T + KL  +Y DR G+
Sbjct: 1   MADDAAQAGDNAEYIKIKVVGQDSNEVHFRVKYGTSMAKLKKSYADRTGV 50


>AF043701-6|AAK18969.1|   91|Caenorhabditis elegans Sumo
           (ubiquitin-related) homologprotein 1 protein.
          Length = 91

 Score = 54.0 bits (124), Expect = 9e-08
 Identities = 23/36 (63%), Positives = 29/36 (80%)
 Frame = +3

Query: 267 VRFRFDGQPINGNDTPTSLEMEEGDTIEVYQQQTGG 374
           +RF FDG+ IN +DTP +LEME+ D IEVYQ+Q GG
Sbjct: 55  LRFLFDGRRINDDDTPKTLEMEDDDVIEVYQEQLGG 90



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 22/50 (44%), Positives = 34/50 (68%), Gaps = 3/50 (6%)
 Frame = +1

Query: 115 MADE--KKGEN-EHINLKVLGQDNAIVQFKIKKHTPLRKLMHAYCDRAGL 255
           MAD+  + G+N E+I +KV+GQD+  V F++K  T + KL  +Y DR G+
Sbjct: 1   MADDAAQAGDNAEYIKIKVVGQDSNEVHFRVKYGTSMAKLKKSYADRTGV 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,997,399
Number of Sequences: 27780
Number of extensions: 285410
Number of successful extensions: 528
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)