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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20589
         (691 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo...   237   2e-61
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=...   228   9e-59
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein...   142   3e-53
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar...   202   8e-51
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E...   173   3e-42
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ...   164   2e-39
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso...   164   2e-39
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso...   160   3e-38
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n...   156   6e-37
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard...   146   4e-34
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot...   138   1e-31
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal...    93   6e-18
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop...    76   7e-13
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu...    75   2e-12
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact...    70   5e-11
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi...    66   8e-10
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano...    65   1e-09
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th...    63   5e-09
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar...    63   7e-09
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo...    62   9e-09
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011...    62   1e-08
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ...    61   2e-08
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc...    61   2e-08
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc...    56   8e-07
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me...    56   8e-07
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc...    56   1e-06
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc...    55   2e-06
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac...    54   2e-06
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta...    53   8e-06
UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n...    51   2e-05
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph...    49   9e-05
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac...    43   0.008
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me...    41   0.033
UniRef50_Q57WH1 Cluster: Putative uncharacterized protein; n=6; ...    35   2.2  
UniRef50_Q890E3 Cluster: Acetyltransferase (GNAT) family; n=1; L...    34   3.8  
UniRef50_A6E8K7 Cluster: Putative uncharacterized protein; n=1; ...    34   3.8  
UniRef50_A2D8S3 Cluster: Surface antigen BspA-like; n=4; Trichom...    34   3.8  
UniRef50_O28859 Cluster: Surface layer protein B; n=1; Archaeogl...    34   3.8  
UniRef50_A3ZWH6 Cluster: Putative uncharacterized protein; n=1; ...    33   6.6  
UniRef50_Q7U147 Cluster: PROBABLE OXIDASE; n=7; Mycobacterium tu...    33   8.7  

>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
           Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
           melanogaster (Fruit fly)
          Length = 261

 Score =  237 bits (579), Expect = 2e-61
 Identities = 107/146 (73%), Positives = 121/146 (82%)
 Frame = +3

Query: 249 KGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 428
           K DGKVRTDPTYPAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+  
Sbjct: 71  KVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQ 130

Query: 429 TGPKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TSQLRRLWDFIKFESGNLCMITGGRNLG 608
            G K VP+LVTHDGRTIRYPDPLI             ++ D+IKF+SGNLCMITGGRNLG
Sbjct: 131 LGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLG 190

Query: 609 RVGTIVSRERHPGSFDIVHIKDSTGH 686
           RVGT+V+RERHPGSFDIVHIKDS GH
Sbjct: 191 RVGTVVNRERHPGSFDIVHIKDSQGH 216



 Score =  119 bits (286), Expect = 8e-26
 Identities = 55/64 (85%), Positives = 58/64 (90%)
 Frame = +2

Query: 41  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 220
           MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G E
Sbjct: 1   MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAE 60

Query: 221 S*KL 232
             K+
Sbjct: 61  VTKI 64


>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
           n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
           isoform - Homo sapiens (Human)
          Length = 263

 Score =  228 bits (558), Expect = 9e-59
 Identities = 100/147 (68%), Positives = 121/147 (82%)
 Frame = +3

Query: 249 KGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 428
           K DGKVRTD TYPAGFMDV+SI+KT E FRLIYD KGRF +HRITPEEAKYKLCKV+++ 
Sbjct: 71  KIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIF 130

Query: 429 TGPKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TSQLRRLWDFIKFESGNLCMITGGRNLG 608
            G K +P+LVTHD RTIRYPDPLIKV        +  ++ DFIKF++GNLCM+TGG NLG
Sbjct: 131 VGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLG 190

Query: 609 RVGTIVSRERHPGSFDIVHIKDSTGHT 689
           R+G I +RERHPGSFD+VH+KD+ G++
Sbjct: 191 RIGVITNRERHPGSFDVVHVKDANGNS 217



 Score =  120 bits (289), Expect = 3e-26
 Identities = 54/64 (84%), Positives = 59/64 (92%)
 Frame = +2

Query: 41  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 220
           MARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+E
Sbjct: 1   MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60

Query: 221 S*KL 232
             K+
Sbjct: 61  VKKI 64


>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
           S4, X isoform (LOC126235), mRNA; n=1; Takifugu
           rubripes|Rep: similar to 40S ribosomal protein S4, X
           isoform (LOC126235), mRNA - Takifugu rubripes
          Length = 291

 Score =  142 bits (344), Expect(2) = 3e-53
 Identities = 60/98 (61%), Positives = 77/98 (78%)
 Frame = +3

Query: 396 KYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TSQLRRLWDFIKFESGN 575
           +YKLCKVK++  G K +P+LVTHD RTIRYPDPLIKV           ++ DFIKF++ N
Sbjct: 152 QYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTVRIDLDTGKITDFIKFDTSN 211

Query: 576 LCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHT 689
           +CM+TGG NLGR+G I +RERHPGSFD+VH+KDSTG++
Sbjct: 212 MCMVTGGANLGRIGVITNRERHPGSFDVVHVKDSTGNS 249



 Score =  118 bits (284), Expect = 1e-25
 Identities = 53/63 (84%), Positives = 58/63 (92%)
 Frame = +2

Query: 44  ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES 223
           ARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+E 
Sbjct: 2   ARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEV 61

Query: 224 *KL 232
            K+
Sbjct: 62  KKI 64



 Score = 89.4 bits (212), Expect(2) = 3e-53
 Identities = 41/50 (82%), Positives = 44/50 (88%)
 Frame = +3

Query: 249 KGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 398
           K DGKVRTD TYP GFMDV+SI+KT E FRLIYDVKGRFT+HRIT EEAK
Sbjct: 71  KIDGKVRTDITYPTGFMDVISIDKTGEHFRLIYDVKGRFTVHRITAEEAK 120


>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
           Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
           thaliana (Mouse-ear cress)
          Length = 262

 Score =  202 bits (492), Expect = 8e-51
 Identities = 92/144 (63%), Positives = 111/144 (77%)
 Frame = +3

Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 434
           DGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I  EEAK+KLCKV+ +  G
Sbjct: 73  DGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFG 132

Query: 435 PKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TSQLRRLWDFIKFESGNLCMITGGRNLGRV 614
            K +PYL T+DGRTIRYPDPLIK         +  ++ +FIKF+ GN+ M+TGGRN GRV
Sbjct: 133 QKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRV 192

Query: 615 GTIVSRERHPGSFDIVHIKDSTGH 686
           G I +RE+H GSF+ +HI+DSTGH
Sbjct: 193 GVIKNREKHKGSFETIHIQDSTGH 216



 Score =  109 bits (261), Expect = 8e-23
 Identities = 48/60 (80%), Positives = 53/60 (88%)
 Frame = +2

Query: 41  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 220
           MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT  E
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60


>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
           Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
           protein S4 - Entamoeba histolytica HM-1:IMSS
          Length = 326

 Score =  173 bits (421), Expect = 3e-42
 Identities = 78/147 (53%), Positives = 104/147 (70%)
 Frame = +3

Query: 249 KGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 428
           K DGK+RTD  YP GFMDV+SI +T E FRL+Y+ K RF +  +T E+AK+KLCK+++  
Sbjct: 71  KIDGKIRTDTRYPVGFMDVLSIPRTKENFRLMYNTKRRFCLVPLTAEQAKFKLCKIEKRV 130

Query: 429 TGPKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TSQLRRLWDFIKFESGNLCMITGGRNLG 608
            G   +PY+VTHDGRTIRYP P ++         +  ++ DF+KF+ GN  M+ GG  +G
Sbjct: 131 LGTGAIPYIVTHDGRTIRYPHPELQANDTIKLNLETGKIVDFVKFDIGNTAMMIGGNGMG 190

Query: 609 RVGTIVSRERHPGSFDIVHIKDSTGHT 689
           RVG IV RE HPGSF+IVHIKD+ G+T
Sbjct: 191 RVGVIVKREVHPGSFEIVHIKDAKGNT 217



 Score =  101 bits (241), Expect = 2e-20
 Identities = 42/60 (70%), Positives = 49/60 (81%)
 Frame = +2

Query: 41  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 220
           MARGP+ HLKRLNAP  WML KLGG +AP+PS GPH ++ECLPL++ LRNRL YAL G E
Sbjct: 1   MARGPRHHLKRLNAPHHWMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYALNGRE 60


>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
           protein; n=1; Tetrahymena thermophila SB210|Rep:
           Ribosomal family S4e containing protein - Tetrahymena
           thermophila SB210
          Length = 370

 Score =  164 bits (398), Expect = 2e-39
 Identities = 76/144 (52%), Positives = 97/144 (67%)
 Frame = +3

Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 434
           DGKVR D  YP G MDVV IEKT++ FR++YD KGRF +  ++ EEAKYKL KV   A G
Sbjct: 185 DGKVRRDKGYPTGLMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIG 244

Query: 435 PKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TSQLRRLWDFIKFESGNLCMITGGRNLGRV 614
           P  +PY+VTHD RTIR+P+P IK+           ++ +F   ESGN+C I  G N+GRV
Sbjct: 245 PNQIPYIVTHDSRTIRFPNPEIKIGDTLKYDLVNNKIENFAHLESGNVCYIQQGNNIGRV 304

Query: 615 GTIVSRERHPGSFDIVHIKDSTGH 686
           G I   E+H GSFDI H+KD+ G+
Sbjct: 305 GIIQHIEKHQGSFDICHVKDAKGN 328



 Score = 62.1 bits (144), Expect = 1e-08
 Identities = 39/88 (44%), Positives = 48/88 (54%), Gaps = 29/88 (32%)
 Frame = +2

Query: 44  ARGPKKHLKRLNAPKAWMLDKLGG-------------------------VYAPRPSTGP- 145
           ARGPKKHLKR+NAPK+WML+KLGG                         +Y  + +T P 
Sbjct: 83  ARGPKKHLKRINAPKSWMLNKLGGIWVITFFAFRLRKNDFITTIPKLKFIYFKKQATRPS 142

Query: 146 ---HKLRECLPLVIFLRNRLKYALTGNE 220
              HKLRE LPL + L+ RL YAL G +
Sbjct: 143 QGPHKLRESLPLSVLLKERLNYALNGRD 170


>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
           protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
           similar to 40S ribosomal protein S4, X isoform - Canis
           familiaris
          Length = 240

 Score =  164 bits (398), Expect = 2e-39
 Identities = 69/114 (60%), Positives = 89/114 (78%)
 Frame = +3

Query: 348 DVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVKIPSS*T 527
           D KGRF +HRITPEEAKYKL KV+++  G K +P+LVTHD RTIRYPDPLIK+       
Sbjct: 76  DTKGRFAVHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKMNDTIQID 135

Query: 528 SQLRRLWDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHT 689
            +  ++ DF KF++GNLCM+TGG NLGR+G I +RE HPGSFD+VH+KD+ G++
Sbjct: 136 LETGKITDFFKFDTGNLCMVTGGTNLGRIGVITNRENHPGSFDVVHVKDANGNS 189



 Score =  110 bits (265), Expect = 3e-23
 Identities = 49/64 (76%), Positives = 55/64 (85%)
 Frame = +2

Query: 41  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 220
           MA  P+KHLK + APK WMLDKL GV+AP PSTGPHKLRECLPL+IFLRNRLKYALTG+E
Sbjct: 1   MAHSPRKHLKHVAAPKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60

Query: 221 S*KL 232
             K+
Sbjct: 61  VKKI 64


>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
           protein S4, X isoform; n=1; Macaca mulatta|Rep:
           PREDICTED: similar to 40S ribosomal protein S4, X
           isoform - Macaca mulatta
          Length = 244

 Score =  160 bits (389), Expect = 3e-38
 Identities = 73/147 (49%), Positives = 100/147 (68%)
 Frame = +3

Query: 249 KGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 428
           K DGK+RTD   P   MDV+SI+K  E F LIY +  RF +HRITPEE KYKLCK++++ 
Sbjct: 81  KVDGKIRTDNNLPYWIMDVISIDKMGEDFCLIYGINRRFALHRITPEEVKYKLCKMRKIF 140

Query: 429 TGPKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TSQLRRLWDFIKFESGNLCMITGGRNLG 608
              K +P+LV HD  T+R+PD LIKV        +  ++   +KF++GNLC++TGG N G
Sbjct: 141 VRAKGIPHLVIHDIHTVRHPDSLIKVNDTIQIDLETGKI-TALKFDTGNLCLVTGGGNWG 199

Query: 609 RVGTIVSRERHPGSFDIVHIKDSTGHT 689
           R+G I +RERHP SFD  H+KD+  ++
Sbjct: 200 RIGVITNRERHPVSFDTFHVKDANSNS 226



 Score = 97.1 bits (231), Expect = 4e-19
 Identities = 47/67 (70%), Positives = 56/67 (83%)
 Frame = +2

Query: 32  LSNMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALT 211
           ++ +A GPK+HLKR+ A + WMLDKL GV+A RPSTGPHKLRECLP  IFLRNRLKYALT
Sbjct: 9   ITAVAFGPKQHLKRVAALQHWMLDKLTGVFAARPSTGPHKLRECLP-HIFLRNRLKYALT 67

Query: 212 GNES*KL 232
           G+E  K+
Sbjct: 68  GDEVKKI 74


>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
           Trichomonas vaginalis G3|Rep: 40S ribosomal protein
           S4-C, putative - Trichomonas vaginalis G3
          Length = 269

 Score =  156 bits (378), Expect = 6e-37
 Identities = 72/145 (49%), Positives = 98/145 (67%)
 Frame = +3

Query: 249 KGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 428
           K DGKVRT+  YP G MDV+ + K+NELFR+IYD KGRF +H I  +EA +KL +V +  
Sbjct: 85  KVDGKVRTNYRYPTGLMDVIELGKSNELFRIIYDCKGRFCVHHIEAKEASFKLLRVNQFK 144

Query: 429 TGPKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TSQLRRLWDFIKFESGNLCMITGGRNLG 608
            G K +P++VTHDGRTI Y DP ++V        +   +   IKF+ G++ M+T G N+G
Sbjct: 145 IGAKGIPHVVTHDGRTISYVDPSVRVHDALKFNIKTGEVESVIKFKVGDVAMVTAGGNVG 204

Query: 609 RVGTIVSRERHPGSFDIVHIKDSTG 683
           RVGTI   E+   SFDIVH+KD++G
Sbjct: 205 RVGTIQKIEKQMASFDIVHLKDTSG 229



 Score = 87.0 bits (206), Expect = 4e-16
 Identities = 43/70 (61%), Positives = 49/70 (70%)
 Frame = +2

Query: 14  SFSI*YLSNMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNR 193
           SFS   L  M R  + HLKRL AP  W+L K  G +A  PSTGPHKLRECLP+ IFLR+R
Sbjct: 6   SFSWSVLFLMPRCQRFHLKRLTAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIFLRDR 65

Query: 194 LKYALTGNES 223
           LKYALT  E+
Sbjct: 66  LKYALTAKEA 75


>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
           theta|Rep: 40S ribosomal protein S4 - Guillardia theta
           (Cryptomonas phi)
          Length = 257

 Score =  146 bits (354), Expect = 4e-34
 Identities = 70/143 (48%), Positives = 95/143 (66%)
 Frame = +3

Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 434
           DGKVR D  +PAG MDV+SI+ T E +R++YD  G F +HRIT +E+ +KLCKV RV+ G
Sbjct: 73  DGKVRADKNFPAGVMDVISIKTTKENYRVLYDNVGHFFLHRITIKESMFKLCKVIRVSIG 132

Query: 435 PKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TSQLRRLWDFIKFESGNLCMITGGRNLGRV 614
            K +PY+VTHDGRTIR+P+ LIK            ++ DFIKF  G+LC++  G N+GR+
Sbjct: 133 SKGIPYIVTHDGRTIRFPNLLIKSNDSIVLDLLNNKVIDFIKFSIGSLCVVIKGSNIGRI 192

Query: 615 GTIVSRERHPGSFDIVHIKDSTG 683
           G  ++     GS  IV +KD  G
Sbjct: 193 GVFINTIGGQGSDSIVCLKDFNG 215



 Score = 89.4 bits (212), Expect = 7e-17
 Identities = 38/61 (62%), Positives = 49/61 (80%)
 Frame = +2

Query: 41  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 220
           M+RG KKH KRLNAPK W+L+KLGG++APR S+GPHK +  +PLVI +RN+LKY+    E
Sbjct: 1   MSRGIKKHYKRLNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRE 60

Query: 221 S 223
           S
Sbjct: 61  S 61


>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
           Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
           major
          Length = 273

 Score =  138 bits (334), Expect = 1e-31
 Identities = 68/143 (47%), Positives = 87/143 (60%)
 Frame = +3

Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 434
           D   R D  YPAGFMDVV I KT + FRL+YDVKGRF +  ++  EA+ KL KV  + T 
Sbjct: 70  DNHPRRDGKYPAGFMDVVEIPKTGDRFRLMYDVKGRFALVNLSEAEAQIKLMKVVNLYTA 129

Query: 435 PKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TSQLRRLWDFIKFESGNLCMITGGRNLGRV 614
              VP  VTHDG  IRYPDP   +        + ++  D IK   G   ++TGG N GR+
Sbjct: 130 TGRVPVAVTHDGHRIRYPDPHTSIGDTIVYNVKEKKCVDLIKNRQGKAVIVTGGANRGRI 189

Query: 615 GTIVSRERHPGSFDIVHIKDSTG 683
           G IV  E HPG+F+I H+KD++G
Sbjct: 190 GEIVKVECHPGAFNIAHLKDASG 212



 Score = 94.3 bits (224), Expect = 3e-18
 Identities = 41/55 (74%), Positives = 45/55 (81%)
 Frame = +2

Query: 56  KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 220
           KKHLKRL APK WML KL GV+APRP  GPHKLRECLPL++ +RNRLKYAL   E
Sbjct: 3   KKHLKRLYAPKDWMLSKLTGVFAPRPRPGPHKLRECLPLLVIIRNRLKYALNARE 57


>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
           Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
           Encephalitozoon cuniculi
          Length = 268

 Score = 93.1 bits (221), Expect = 6e-18
 Identities = 50/147 (34%), Positives = 86/147 (58%)
 Frame = +3

Query: 249 KGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 428
           K +G+VRT+  +P G  DVVSIEKT E FR++Y+V  +F +HRI+ EEA Y+L KV +  
Sbjct: 71  KVNGRVRTNSHFPVGLFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKVTKKY 130

Query: 429 TGPKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TSQLRRLWDFIKFESGNLCMITGGRNLG 608
              + +PY+V+  G +IR+ DP I +      +++  ++ ++I      +  ++ G+  G
Sbjct: 131 EN-QGIPYIVSSCGLSIRFCDPAIDLGYTIKISNETSKVIEYIVPGPDKVIFVSRGKARG 189

Query: 609 RVGTIVSRERHPGSFDIVHIKDSTGHT 689
           RVG +++     G   +  + D  G+T
Sbjct: 190 RVG-VINTISTQGKETVYGMTDFAGNT 215



 Score = 68.1 bits (159), Expect = 2e-10
 Identities = 29/55 (52%), Positives = 37/55 (67%)
 Frame = +2

Query: 41  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 205
           M  G + HLKR  APK+WMLDK GG +A  P++GPHK  EC+PL   +   L+YA
Sbjct: 1   MPTGHRDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYA 55


>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
           Thermoplasma|Rep: 30S ribosomal protein S4e -
           Thermoplasma acidophilum
          Length = 235

 Score = 76.2 bits (179), Expect = 7e-13
 Identities = 48/143 (33%), Positives = 72/143 (50%), Gaps = 1/143 (0%)
 Frame = +3

Query: 249 KGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 428
           K DGK   +  +  GFMDV+ I    E +R++Y+ +G   + + T E A  KL KV+   
Sbjct: 67  KVDGKTVREKKFAVGFMDVIEIN--GESYRVVYNDQGALVLMKETKERASMKLLKVRSKV 124

Query: 429 TGPKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TSQLRRLWDFIKFESGNLCMITGGRNLG 608
             P N   L THDGRT    D   KV    + +    ++ + IK + GN   IT G ++ 
Sbjct: 125 IAPGNRIQLGTHDGRTFITDDKSKKVGDVWAVSVPDMKISEIIKMQPGNKAYITAGSHVN 184

Query: 609 RVGTIVSRERHPG-SFDIVHIKD 674
           + GTI   E   G S ++VH ++
Sbjct: 185 QTGTISKIEAKEGSSANLVHFQE 207


>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
           Desulfurococcales|Rep: 30S ribosomal protein S4e -
           Aeropyrum pernix
          Length = 253

 Score = 74.9 bits (176), Expect = 2e-12
 Identities = 55/159 (34%), Positives = 80/159 (50%), Gaps = 15/159 (9%)
 Frame = +3

Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLI-YDVKGRFTIHRITPEEAKYKLCKVKRVAT 431
           DG VR D  +P GFMDV+ +  T E FR++ Y VK  F +H I  EE   K  +++   T
Sbjct: 74  DGVVRKDYKFPVGFMDVIEVVDTGEKFRMLPYPVK-FFKLHPIPEEEGDLKPVRIENKTT 132

Query: 432 GPKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TSQLRRLWD-------------FIKFESG 572
                  L  HDGR I     L++VK P +    + R  D              IKF  G
Sbjct: 133 VKGGHVQLNLHDGRNI-----LVRVKDPRNPVEDVYRTMDTLLITVPGQEIKGHIKFGEG 187

Query: 573 NLCMITGGRNLGRVGTIVSRERHPG-SFDIVHIKDSTGH 686
            + +I GGRN+GRVG + S ++  G    +V ++D++G+
Sbjct: 188 AIAIIVGGRNVGRVGVVKSVQKGWGRKRTLVTLEDASGN 226



 Score = 50.4 bits (115), Expect = 4e-05
 Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
 Frame = +2

Query: 41  MAR-GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGN 217
           MAR G ++ LK L AP+ W + +    +A +P  GPH   + LPL++ +RN L YA T  
Sbjct: 1   MARMGGQRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAR 60

Query: 218 ES*KL 232
           E+ KL
Sbjct: 61  EARKL 65


>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
           Methanobacteriaceae|Rep: Ribosomal protein S4e -
           Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
           861)
          Length = 242

 Score = 70.1 bits (164), Expect = 5e-11
 Identities = 40/129 (31%), Positives = 69/129 (53%), Gaps = 6/129 (4%)
 Frame = +3

Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 434
           DG+V  D  +P GFMD++ I KT E++R++ D KGR  +++I  EE   KLCK+   +T 
Sbjct: 74  DGRVIKDYKFPVGFMDIIEIPKTGEVYRVLLDKKGRLQLNKI--EENDSKLCKIVNKSTI 131

Query: 435 PKNVPYLVTHDGRTIRYPD------PLIKVKIPSS*TSQLRRLWDFIKFESGNLCMITGG 596
                 +  HDG+ +   +       +I +K+P         + +  + + G   +ITGG
Sbjct: 132 KGGKIQVNLHDGKNVIIDENDYNVGDVIDLKVPD------HEINEVFELKEGACVLITGG 185

Query: 597 RNLGRVGTI 623
           ++ G +GT+
Sbjct: 186 KHTGELGTV 194



 Score = 46.4 bits (105), Expect = 7e-04
 Identities = 21/66 (31%), Positives = 34/66 (51%)
 Frame = +2

Query: 50  GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*K 229
           G +KHLK   APK W +      +  +PS G H +   L L + +R+ LK A    E+ +
Sbjct: 5   GSRKHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKR 64

Query: 230 L*NNAS 247
           + N+ +
Sbjct: 65  IINSGN 70


>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
           Bigelowiella natans|Rep: 40S ribosomal protein S4 -
           Bigelowiella natans (Pedinomonas minutissima)
           (Chlorarachnion sp.(strain CCMP 621))
          Length = 242

 Score = 66.1 bits (154), Expect = 8e-10
 Identities = 36/143 (25%), Positives = 67/143 (46%)
 Frame = +3

Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 434
           +GK      +P   MD +S    N+ +R++    G+ T++ I   E   K+CKV ++   
Sbjct: 73  NGKKCLSHKFPISLMDTISFPLANKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINA 132

Query: 435 PKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TSQLRRLWDFIKFESGNLCMITGGRNLGRV 614
                 ++T D R ++     IKV+      +    +   +KFE G+LC+IT G++LG +
Sbjct: 133 SSKNKIIITDDLRELKINYAKIKVEDSLLIKTINDEIVYALKFEVGSLCLITRGKHLGTI 192

Query: 615 GTIVSRERHPGSFDIVHIKDSTG 683
             I    +      ++H++   G
Sbjct: 193 AVIKEIRKTKSLRKMIHLEKIDG 215



 Score = 32.7 bits (71), Expect = 8.7
 Identities = 18/64 (28%), Positives = 33/64 (51%)
 Frame = +2

Query: 41  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 220
           MA+G KKH KR+++       K  G++  + S+GPH   + + L+  ++     A    E
Sbjct: 1   MAKGIKKHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQE 60

Query: 221 S*KL 232
           + K+
Sbjct: 61  AQKV 64


>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
           Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
           Methanopyrus kandleri
          Length = 260

 Score = 65.3 bits (152), Expect = 1e-09
 Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 15/158 (9%)
 Frame = +3

Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 434
           DG VR +P +P G MDVV I +T + +R++ +   R  +  I+ EEA+ K+C++K     
Sbjct: 77  DGVVRKEPKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYV 136

Query: 435 PKNVPYLVTHDGRT--IRYPDPL------------IKVKIPSS*TSQLRRLWDFIKFESG 572
                 +  HDG+   +   DP             + +++P   + +  ++ D I FE G
Sbjct: 137 RGGNLQITMHDGKNWLVEIEDPTDPKEDVYSVGDSLVLELPEPDSGESWKVVDHIPFEEG 196

Query: 573 NLCMITGGRNLGRVGTIVSRERHPG-SFDIVHIKDSTG 683
                  GR+ G VG +V  +   G   D++ +++  G
Sbjct: 197 VWVYAMTGRHSGEVGRVVEIQTFEGPQEDLITVENPEG 234



 Score = 62.5 bits (145), Expect = 9e-09
 Identities = 30/62 (48%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
 Frame = +2

Query: 50  GPKKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES* 226
           GPK+H+KRL AP AW +  K GG +APRP  GPH +   +PL+I +R+ L YA    E+ 
Sbjct: 7   GPKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREAR 66

Query: 227 KL 232
           K+
Sbjct: 67  KI 68


>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
           Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
           central - Thermofilum pendens (strain Hrk 5)
          Length = 251

 Score = 63.3 bits (147), Expect = 5e-09
 Identities = 45/152 (29%), Positives = 70/152 (46%), Gaps = 9/152 (5%)
 Frame = +3

Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 434
           DG+V TD  +P G MDV+ I    + +R++ D   +     I PEEA YKL +++R  T 
Sbjct: 76  DGRVVTDYKFPVGLMDVLHIIPEEKYYRVVPDPARKLRFVEIKPEEAGYKLAQIRRKMTV 135

Query: 435 PKNVPYLVTHDGRT--IRYPDPLIKVKIPSS*TSQL------RRLWDFIKFESGNLCMIT 590
                    HDGR   IR         I       L      + +   + FE G L ++ 
Sbjct: 136 KNGDLQFTLHDGRNVLIRKGSEAYSTAISYKTYDALLITIPRQSIVSHVPFEVGTLAIVV 195

Query: 591 GGRNLGRVGTI-VSRERHPGSFDIVHIKDSTG 683
            GRN+G +G I   ++    S  +V ++D++G
Sbjct: 196 DGRNVGFMGRINAIQQVFKRSRALVELEDASG 227



 Score = 46.8 bits (106), Expect = 5e-04
 Identities = 22/64 (34%), Positives = 34/64 (53%)
 Frame = +2

Query: 32  LSNMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALT 211
           +    +G  +HL+R  AP  W + +   V+  +PS GPH L   +P+ I LR+   YA T
Sbjct: 1   MGRKVKGSLRHLRRSVAPPFWPIKRKEYVWTVKPSPGPHSLLSSIPIGIVLRDVFGYAKT 60

Query: 212 GNES 223
             E+
Sbjct: 61  MKEA 64


>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
           Euryarchaeota|Rep: 30S ribosomal protein S4e -
           Methanococcus maripaludis
          Length = 244

 Score = 62.9 bits (146), Expect = 7e-09
 Identities = 28/62 (45%), Positives = 40/62 (64%)
 Frame = +2

Query: 47  RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES* 226
           +GP+KHLKRL AP  W L +    +  RPS GPH + + LPL++ +R+ LKYA    E+ 
Sbjct: 4   KGPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAK 63

Query: 227 KL 232
           K+
Sbjct: 64  KI 65



 Score = 56.8 bits (131), Expect = 5e-07
 Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 10/153 (6%)
 Frame = +3

Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV--KRVA 428
           DG  R +  +PAG MDV+SI + +E + +++D  GR ++ +   ++   KLCK+  K V 
Sbjct: 74  DGLKRKEYKHPAGLMDVLSIPEMDETYLVLFDESGRISLKK--TDKTDVKLCKIVNKTVV 131

Query: 429 TGPKNVPYLVTHDGRT--IRYPDPL-IKVKIPSS*TSQL-----RRLWDFIKFESGNLCM 584
            G  N+  L  HDGR   ++  D    +  +  +  S L     + +   + F  G L  
Sbjct: 132 KG-GNI-QLNLHDGRNQIVKVSDAAKAEEDVYKTGDSVLISIPEQSIAGHVAFGEGKLAY 189

Query: 585 ITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTG 683
           ITGG+++G    IV  E      DIV +++  G
Sbjct: 190 ITGGKHVGEFAKIVEVENRALYSDIVTLENKDG 222


>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
           Sulfolobaceae|Rep: 30S ribosomal protein S4e -
           Sulfolobus acidocaldarius
          Length = 244

 Score = 62.5 bits (145), Expect = 9e-09
 Identities = 44/128 (34%), Positives = 60/128 (46%), Gaps = 5/128 (3%)
 Frame = +3

Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 434
           DGKVR D  YP G MDVV I   +   R+I D     T   I+ E+AKYK  ++    T 
Sbjct: 68  DGKVRRDYKYPVGLMDVVEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIMNKTTL 127

Query: 435 PKNVPYLVTHDGRTIRYP-DPLIKVKIPSS*TSQL----RRLWDFIKFESGNLCMITGGR 599
              V  L   DGR I    + L +  +P+  T ++    +++      + G   MI GGR
Sbjct: 128 KSGVLQLNLEDGRNILLKGEELSQYNLPTLTTLKIELPEQKITTAYTIKEGVYAMIIGGR 187

Query: 600 NLGRVGTI 623
           N G  G I
Sbjct: 188 NAGLHGKI 195



 Score = 35.1 bits (77), Expect = 1.6
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +2

Query: 62  HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES 223
           H+ R  AP    + K    +  R   GPHK++E +PL I L+  LK   T  E+
Sbjct: 3   HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREA 56


>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
           n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
           protein Faci_03001139 - Ferroplasma acidarmanus fer1
          Length = 241

 Score = 62.1 bits (144), Expect = 1e-08
 Identities = 42/130 (32%), Positives = 62/130 (47%), Gaps = 1/130 (0%)
 Frame = +3

Query: 249 KGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VKRV 425
           K DG++  D  +P GFMDV+SI+     + ++YD KG+  I +  P     KL K VK+ 
Sbjct: 68  KVDGRIVKDRRFPVGFMDVLSIDTLENDYIIVYDRKGKLVIRQNAPGNKGLKLFKVVKKT 127

Query: 426 ATGPKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TSQLRRLWDFIKFESGNLCMITGGRNL 605
             G   +  L  HDG+TI      I              + + +K   G+   ITGG ++
Sbjct: 128 IIGTGKI-QLGFHDGKTIVTDRKDINTSDVLLMKIPDLEIENVLKIAEGDKVFITGGSHV 186

Query: 606 GRVGTIVSRE 635
           G + TI S E
Sbjct: 187 GELATIKSIE 196


>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
           maquilingensis IC-167|Rep: Ribosomal protein S4E -
           Caldivirga maquilingensis IC-167
          Length = 237

 Score = 61.3 bits (142), Expect = 2e-08
 Identities = 42/130 (32%), Positives = 59/130 (45%), Gaps = 3/130 (2%)
 Frame = +3

Query: 249 KGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 428
           K DGKVR D  YP G MDV+ +   NE +R+I D        RI   EA  K+C+++   
Sbjct: 66  KVDGKVRRDYKYPVGLMDVIELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIEDKT 125

Query: 429 TGPKNVPYLVTHDGRTIRY-PDPLIKVKIPSS*TSQLR--RLWDFIKFESGNLCMITGGR 599
                   L  HDGR I    D   K +   S    L   +L D+   +     +   G 
Sbjct: 126 MVKAGKIQLNLHDGRNIIVDQDEGRKYETLGSVVVNLEDGKLMDYYPMQPNQYVIAFNGV 185

Query: 600 NLGRVGTIVS 629
           N+GR GT+++
Sbjct: 186 NVGRHGTLIN 195



 Score = 47.2 bits (107), Expect = 4e-04
 Identities = 19/54 (35%), Positives = 32/54 (59%)
 Frame = +2

Query: 62  HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES 223
           HL+R  +P+ W +++ G  ++ +PS GPH     +PL + LR+   YA T  E+
Sbjct: 3   HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREA 56


>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
           Euryarchaeota|Rep: 30S ribosomal protein S4e -
           Methanosarcina mazei (Methanosarcina frisia)
          Length = 235

 Score = 61.3 bits (142), Expect = 2e-08
 Identities = 42/143 (29%), Positives = 66/143 (46%), Gaps = 1/143 (0%)
 Frame = +3

Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 434
           DG  R D  +P G  DV+++   NE +R++ D KGR  ++++  E    KLC++    T 
Sbjct: 68  DGISRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLVLYKLN-ETNVNKLCRINNKTTV 126

Query: 435 PKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TSQLRRLWDFIKFESGNLCMITGGRNLGRV 614
                 L  +DG  I   +     K     +   + +   +KFE GNL M+ GG++ G  
Sbjct: 127 KGGKIQLNLNDGTNILGSND-YGTKDSLILSIPDKHVVKHLKFEVGNLAMVIGGQHSGET 185

Query: 615 GTIVS-RERHPGSFDIVHIKDST 680
           G I+  RE      + V I   T
Sbjct: 186 GKIMEIREVKSSRHNTVMISGET 208



 Score = 39.9 bits (89), Expect = 0.057
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +2

Query: 62  HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLK 199
           H KRL+ PK+W + + G  +      GPH     LPL + +R+ LK
Sbjct: 3   HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLK 48


>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
           Methanococcoides burtonii DSM 6242|Rep: Ribosomal
           protein S4E - Methanococcoides burtonii (strain DSM
           6242)
          Length = 236

 Score = 56.0 bits (129), Expect = 8e-07
 Identities = 36/123 (29%), Positives = 61/123 (49%)
 Frame = +3

Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 434
           DG  R D  +P G MD+++I   N  +R++ D K R  ++++    A  KLC+++   + 
Sbjct: 69  DGVARKDLRFPVGLMDIITIPLNNVEYRVMLDGKSRLVLNKLDGTGAD-KLCRIEGKTSI 127

Query: 435 PKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TSQLRRLWDFIKFESGNLCMITGGRNLGRV 614
            +    +  +DG  I         K     +   +++   IK+E GNL MI GG + G V
Sbjct: 128 KEGKIQMRLNDGVNI-IGSNNYNTKDSIILSVPDKKVVKHIKYEVGNLAMIVGGSHAGEV 186

Query: 615 GTI 623
           G+I
Sbjct: 187 GSI 189



 Score = 39.9 bits (89), Expect = 0.057
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 62  HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRL 196
           H KR++ PK+W + K    +      GPH   + +PL + LR+ L
Sbjct: 4   HQKRISVPKSWQISKKSNKWITSTRPGPHNRLQSIPLAVILRDML 48


>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
           Methanomicrobiales|Rep: Ribosomal protein S4E, central -
           Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
           / JR1)
          Length = 242

 Score = 56.0 bits (129), Expect = 8e-07
 Identities = 45/150 (30%), Positives = 65/150 (43%), Gaps = 7/150 (4%)
 Frame = +3

Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 434
           +G+   D     G  D+VSI K  + +R+  DVKG      I  E AK +LCK++   T 
Sbjct: 68  NGRACKDSRMGLGVFDIVSIPKLGKHYRIQLDVKGNLVAIEIPAESAKTRLCKIRNKTTV 127

Query: 435 PKNVPYLVTHDGRTIRYPDPLIKVK----IPSS*TSQLR-RLWDFIKFESGNLCMITGGR 599
                 L    G  +   D   K K    +      + R R+ D   +  GN+ MI GG+
Sbjct: 128 KGGKVQLNFAFGANV-LADNTYKAKDSVVVTLGTDGEDRFRIVDHFPYAEGNVAMIVGGK 186

Query: 600 NLGRVGTIVSRERHPGSF--DIVHIKDSTG 683
           + G+VG IV   R   S    ++   DS G
Sbjct: 187 HSGKVGRIVEIIRTASSVPNHVILTDDSAG 216



 Score = 35.1 bits (77), Expect = 1.6
 Identities = 19/58 (32%), Positives = 31/58 (53%)
 Frame = +2

Query: 59  KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL 232
           K+LKRL AP +W + K    +  + + GPH     LP+ ++LR  +  A   +E  K+
Sbjct: 3   KYLKRLVAPGSWHIPKKVQKFVMKTAPGPHN-AGALPVGVWLREHIGLAQNASEVKKI 59


>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
           Euryarchaeota|Rep: 30S ribosomal protein S4E -
           Uncultured methanogenic archaeon RC-I
          Length = 234

 Score = 55.6 bits (128), Expect = 1e-06
 Identities = 35/123 (28%), Positives = 56/123 (45%)
 Frame = +3

Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 434
           DGKVR D  Y  G  D +SI   N  +R++  + G+F  H +   +A  K+CK+      
Sbjct: 70  DGKVRKDYRYTVGMFDTISIPAINANYRVVIGMDGKF--HLVPVTDASAKICKIVNKTAL 127

Query: 435 PKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TSQLRRLWDFIKFESGNLCMITGGRNLGRV 614
                 L  HDG T+   +   K K         R++     +  G+L M+T G++ G +
Sbjct: 128 RGGKIQLNLHDGTTMIASND-YKTKDSVILKMPERKIDQHFTYAVGSLVMVTEGKHSGEI 186

Query: 615 GTI 623
           G +
Sbjct: 187 GKV 189



 Score = 42.3 bits (95), Expect = 0.011
 Identities = 20/57 (35%), Positives = 31/57 (54%)
 Frame = +2

Query: 62  HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL 232
           HLKR+ AP+ W + +    +  +P  G H     +PLV+ LR+ LK A   +E  K+
Sbjct: 5   HLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKI 61


>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
           Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
           Nanoarchaeum equitans
          Length = 234

 Score = 54.8 bits (126), Expect = 2e-06
 Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 1/124 (0%)
 Frame = +3

Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VKRVAT 431
           DG+   D  +P G  DV++I + NE +R++ D +G+  + +I  EEA  K  K +++V+ 
Sbjct: 74  DGRPIKDYKFPVGLFDVLAIPEINEYYRVLLDERGKLYLKKIDKEEANIKYGKIIRKVSV 133

Query: 432 GPKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TSQLRRLWDFIKFESGNLCMITGGRNLGR 611
               + Y +T DGRT    D   K            ++ + I  E      I  G++ GR
Sbjct: 134 RGGKIQYTLT-DGRTF-LGDNSYKTHYGVVYEIPNFKIREVIPLEKDRKAYIIRGKHTGR 191

Query: 612 VGTI 623
           +G I
Sbjct: 192 IGVI 195



 Score = 41.5 bits (93), Expect = 0.019
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +2

Query: 56  KKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL 232
           K+HL+ L  P+ W +  K  G +  +PS GPH     +P+ ++LR+ L  A    E   L
Sbjct: 6   KRHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYL 65

Query: 233 *NN 241
            NN
Sbjct: 66  LNN 68


>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
           Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
           aerophilum
          Length = 238

 Score = 54.4 bits (125), Expect = 2e-06
 Identities = 27/55 (49%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
 Frame = +2

Query: 62  HLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES 223
           HL+R  AP  W +  K GGV+  RPS GPH L   LPL + +R+ LKYA T +E+
Sbjct: 3   HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEA 57



 Score = 51.6 bits (118), Expect = 2e-05
 Identities = 40/128 (31%), Positives = 60/128 (46%), Gaps = 3/128 (2%)
 Frame = +3

Query: 249 KGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 428
           K DG VR D  +P G MDV+ I  T E++R++ D    + +  I+ EEA  KL +V+   
Sbjct: 67  KVDGVVRRDYKFPVGLMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRVEGKT 126

Query: 429 TGPKNVPYLVTHDGRT-IRYPDPLIKVKIPSS*TSQLRR--LWDFIKFESGNLCMITGGR 599
                   L  HDGR  I   +   ++K   S    LR   +   I  + G   ++  G 
Sbjct: 127 MVKGGRIQLHFHDGRNLITTLEAGKQIKTFDSVLYDLRNKAIKAHIPLKLGVNAVVIHGS 186

Query: 600 NLGRVGTI 623
           N+G  GT+
Sbjct: 187 NVGFSGTL 194


>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
           samples|Rep: Ribosomal protein S4 - uncultured marine
           group II euryarchaeote DeepAnt-JyKC7
          Length = 232

 Score = 52.8 bits (121), Expect = 8e-06
 Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 5/132 (3%)
 Frame = +3

Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 434
           DG++ TD     G MDV+++ + +  FR I DV G+     I+ + A  KLC+V   +T 
Sbjct: 70  DGRIETDLGRGVGLMDVLTVGEDS--FRCILDVNGKLRYRSISDKAAASKLCRVMGKSTI 127

Query: 435 PKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TSQLRRLWD-----FIKFESGNLCMITGGR 599
                 +  HDGR I   D     K+  S  + +  L D        F  G    +TGG 
Sbjct: 128 TDGKTQIHLHDGRNILVSD----AKLYDSGDTLVISLPDQSVAGHHPFSKGATAYLTGGS 183

Query: 600 NLGRVGTIVSRE 635
           ++G    +VSR+
Sbjct: 184 HIGITAKVVSRD 195



 Score = 42.7 bits (96), Expect = 0.008
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = +2

Query: 62  HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 205
           H+KRL  P++W L +   ++  +P+ G H    C+PL + LR+ L  A
Sbjct: 5   HMKRLTMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPLGVILRDVLDLA 52


>UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
           Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
           sequence - Ostreococcus tauri
          Length = 197

 Score = 51.2 bits (117), Expect = 2e-05
 Identities = 40/128 (31%), Positives = 60/128 (46%), Gaps = 2/128 (1%)
 Frame = -3

Query: 677 GVLDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQVPRLKLDEVP*SS*LRCLTGWN--LD 504
           GVL VHN EG  + LA  D      V  + DH Q   ++LD +     +R     N    
Sbjct: 68  GVLQVHNFEGTDVLLAALDHPDATGVVTTGDHAQSADVELDRI--GDLVRRDVDHNGVTL 125

Query: 503 FDKWVWVADGAAIMRYQVRNILRSGRHTLDFTQLVLSLLRGDTVDCESALNIID*TKQFI 324
            D  + V +GAA+++   R+ L          QLVL     D V  ES+L ++D  + FI
Sbjct: 126 LDHGIRVTNGAAVVQTDARHALVPELLAPHLAQLVLRFDSLDAVHNESSLGVVDEPEVFI 185

Query: 323 SLLN*DNI 300
           +L + D++
Sbjct: 186 ALFDGDDV 193


>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
           Picrophilus torridus|Rep: 30S ribosomal protein S4e -
           Picrophilus torridus
          Length = 234

 Score = 49.2 bits (112), Expect = 9e-05
 Identities = 45/147 (30%), Positives = 66/147 (44%), Gaps = 7/147 (4%)
 Frame = +3

Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 434
           DGKV  +     GFMD +++   + L  + YD KG+  I     E    KL +VK     
Sbjct: 69  DGKVVKERRRGIGFMDTLTVSGNDYL--VSYDRKGKLVILPKPGETKGLKLLRVKGKTYV 126

Query: 435 PKNVPYLVTHDGRTIRYPDPLIK------VKIPSS*TSQLRRLWDFIKFESGNLCMITGG 596
                 +  HDG T+      IK      VKIP       + + D +KF  GN   ITGG
Sbjct: 127 KGGRIQISFHDGSTMVTDRKDIKNGDSVLVKIPK------KEIVDVLKFAPGNRVFITGG 180

Query: 597 RNLGRVGTIVSRE-RHPGSFDIVHIKD 674
            ++G + TI S E +     ++VH+ +
Sbjct: 181 SHVGEIATIKSIEIKSSSGENMVHMNE 207


>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
           Halobacteriaceae|Rep: 30S ribosomal protein S4E -
           Haloarcula marismortui (Halobacterium marismortui)
          Length = 234

 Score = 42.7 bits (96), Expect = 0.008
 Identities = 33/133 (24%), Positives = 54/133 (40%), Gaps = 1/133 (0%)
 Frame = +3

Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 434
           +GK  +D   P G  D+++  +  E +R+     GR  +  I P+ A+ KL K+      
Sbjct: 68  NGKAISDEERPVGMFDILAFTEREEYYRVFPGEGGRLALTAIDPDAAQSKLGKIVTKTHV 127

Query: 435 PKNVPYLVTHDGRTIRYPDPLIKVKIPSS*T-SQLRRLWDFIKFESGNLCMITGGRNLGR 611
                 L  HDG T+   D        S    ++   +    ++E G L     G + G 
Sbjct: 128 SGGDVQLGLHDGETLIVEDDQTYDAGDSIVVGNEDGEVVAHFEYEEGALVTAVDGAHAGE 187

Query: 612 VGTIVSRERHPGS 650
           VG +   +  PGS
Sbjct: 188 VGEVEEIQVTPGS 200



 Score = 37.1 bits (82), Expect = 0.40
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = +2

Query: 62  HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 205
           H KRL+ P +W +++    +  +   GPH     +PL+I LR+ L YA
Sbjct: 4   HQKRLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYA 50


>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
           Methanocorpusculum labreanum Z|Rep: Ribosomal protein
           S4E, central - Methanocorpusculum labreanum (strain ATCC
           43576 / DSM 4855 / Z)
          Length = 239

 Score = 40.7 bits (91), Expect = 0.033
 Identities = 20/55 (36%), Positives = 31/55 (56%)
 Frame = +2

Query: 68  KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL 232
           KR+ AP AW + +    Y    S+GPH     LP+ I+LR+ +++AL   E  K+
Sbjct: 5   KRMTAPDAWQIARKESKYVVSTSSGPHD-GSALPIGIWLRDHMQFALNTKEVRKI 58



 Score = 35.1 bits (77), Expect = 1.6
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = +3

Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 431
           +G + TD        D++S  K ++ + ++ D KGR   + I+ + AK +L KV    T
Sbjct: 67  NGHIVTDEHIGIDVFDIISFPKIDKHYMILVDEKGRHNEYEISADAAKLQLVKVANKTT 125


>UniRef50_Q57WH1 Cluster: Putative uncharacterized protein; n=6;
            Trypanosoma|Rep: Putative uncharacterized protein -
            Trypanosoma brucei
          Length = 1760

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 17/70 (24%), Positives = 36/70 (51%)
 Frame = +3

Query: 219  NPENCETTPHKGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 398
            N E    T  +G+  +RTDP+Y +    V+ +++   L  +I++++  F+   +   + K
Sbjct: 1039 NEELRRETRRRGECILRTDPSYHSAPSAVIKLQQLIRLEEIIFNMRNNFSNELLKLRDEK 1098

Query: 399  YKLCKVKRVA 428
             +LC    V+
Sbjct: 1099 ERLCGTLNVS 1108


>UniRef50_Q890E3 Cluster: Acetyltransferase (GNAT) family; n=1;
           Lactobacillus plantarum|Rep: Acetyltransferase (GNAT)
           family - Lactobacillus plantarum
          Length = 163

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +1

Query: 418 SVWRPDLRMFRTW*RMMAAPSATQTHLSKSRFHPVRHRNYEDYGTSSSL 564
           + WRP+    R W  M+ A +A    +    F P RH NYE +G   SL
Sbjct: 46  ATWRPE----RRWQNMLLAMTADGEVVGVCTFGPARHANYEGWGELYSL 90


>UniRef50_A6E8K7 Cluster: Putative uncharacterized protein; n=1;
           Pedobacter sp. BAL39|Rep: Putative uncharacterized
           protein - Pedobacter sp. BAL39
          Length = 195

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
 Frame = -2

Query: 228 FQDSFPVKAYFRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAFKRFK---CF 58
           F   F  KA FR+ +RK+  G+H+      +D   A+T PSL   H     KR++    F
Sbjct: 11  FLGRFFFKARFRKLIRKL--GRHTEVYLVDIDNTLAHTWPSLQQRHYSAENKRYRSLPIF 68

Query: 57  LGPRAML 37
           +G R+ L
Sbjct: 69  IGMRSYL 75


>UniRef50_A2D8S3 Cluster: Surface antigen BspA-like; n=4; Trichomonas
            vaginalis G3|Rep: Surface antigen BspA-like - Trichomonas
            vaginalis G3
          Length = 1474

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 24/76 (31%), Positives = 41/76 (53%)
 Frame = +3

Query: 399  YKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TSQLRRLWDFIKFESGNL 578
            +KL K++ +     N+P  V H  +T  +  P+  V IP S    ++ ++D   F   NL
Sbjct: 871  FKLSKLRSI-----NIPNTVVHIYKTAFFGVPMTDVVIPDS----VQYIYD-KAFAESNL 920

Query: 579  CMITGGRNLGRVGTIV 626
              IT GRNL ++G+++
Sbjct: 921  TNITLGRNLVKMGSLI 936


>UniRef50_O28859 Cluster: Surface layer protein B; n=1; Archaeoglobus
            fulgidus|Rep: Surface layer protein B - Archaeoglobus
            fulgidus
          Length = 2425

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 14/95 (14%)
 Frame = +3

Query: 210  PETNPENCETTPHKGD-GKVRT--DPTYPA-----GFMDVVSIEKTNELFRLIYDVKGRF 365
            PETNP N     H+G+  +V+     TYP+      F   + +EK  E      +V+G++
Sbjct: 2322 PETNPTNLREGCHEGNFAEVQNVWVETYPSVTDKNPFWGCIILEKVGE--DRWEEVRGQY 2379

Query: 366  TIHRITPE------EAKYKLCKVKRVATGPKNVPY 452
             + R TP       +  Y+ C++ R  TG ++V Y
Sbjct: 2380 NVKRSTPSSTSYTWDCGYRECQMTRSYTGSRDVTY 2414


>UniRef50_A3ZWH6 Cluster: Putative uncharacterized protein; n=1;
            Blastopirellula marina DSM 3645|Rep: Putative
            uncharacterized protein - Blastopirellula marina DSM 3645
          Length = 1365

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 18/61 (29%), Positives = 33/61 (54%)
 Frame = +3

Query: 480  RYPDPLIKVKIPSS*TSQLRRLWDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDI 659
            R  +PL ++ +  + T++L RLW  ++F SG+   I G   L ++    +++  P  FD 
Sbjct: 871  REDEPLRRLLLTETETARLNRLWSELRFVSGDALTIVGA--LEQLLEYATQDGRPSDFDP 928

Query: 660  V 662
            V
Sbjct: 929  V 929


>UniRef50_Q7U147 Cluster: PROBABLE OXIDASE; n=7; Mycobacterium
           tuberculosis complex|Rep: PROBABLE OXIDASE -
           Mycobacterium bovis
          Length = 504

 Score = 32.7 bits (71), Expect = 8.7
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = -3

Query: 173 PGASTRATCGDRLTVSVHTHXQVCPTSMLWERLSASNAS*GLAPCWTSI 27
           PG   RAT GD + VSV T+    PTS+ W  ++  N   G  P   +I
Sbjct: 93  PGPLIRATVGDEIVVSV-TNRLGDPTSVHWHGIALRNDMDGTEPATANI 140


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 768,422,381
Number of Sequences: 1657284
Number of extensions: 16621543
Number of successful extensions: 44218
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 42266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44159
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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