BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20589 (691 letters) Database: uniref50 1,657,284 sequences; 575,637,011 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 237 2e-61 UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 228 9e-59 UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 142 3e-53 UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 202 8e-51 UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 173 3e-42 UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 164 2e-39 UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 164 2e-39 UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 160 3e-38 UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 156 6e-37 UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 146 4e-34 UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 138 1e-31 UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 93 6e-18 UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 76 7e-13 UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 75 2e-12 UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 70 5e-11 UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 66 8e-10 UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 65 1e-09 UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 63 5e-09 UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 63 7e-09 UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 62 9e-09 UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 62 1e-08 UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 61 2e-08 UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 61 2e-08 UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 56 8e-07 UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 56 8e-07 UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 56 1e-06 UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 55 2e-06 UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 54 2e-06 UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 53 8e-06 UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n... 51 2e-05 UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 49 9e-05 UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 43 0.008 UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 41 0.033 UniRef50_Q57WH1 Cluster: Putative uncharacterized protein; n=6; ... 35 2.2 UniRef50_Q890E3 Cluster: Acetyltransferase (GNAT) family; n=1; L... 34 3.8 UniRef50_A6E8K7 Cluster: Putative uncharacterized protein; n=1; ... 34 3.8 UniRef50_A2D8S3 Cluster: Surface antigen BspA-like; n=4; Trichom... 34 3.8 UniRef50_O28859 Cluster: Surface layer protein B; n=1; Archaeogl... 34 3.8 UniRef50_A3ZWH6 Cluster: Putative uncharacterized protein; n=1; ... 33 6.6 UniRef50_Q7U147 Cluster: PROBABLE OXIDASE; n=7; Mycobacterium tu... 33 8.7 >UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila melanogaster (Fruit fly) Length = 261 Score = 237 bits (579), Expect = 2e-61 Identities = 107/146 (73%), Positives = 121/146 (82%) Frame = +3 Query: 249 KGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 428 K DGKVRTDPTYPAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+ Sbjct: 71 KVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQ 130 Query: 429 TGPKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TSQLRRLWDFIKFESGNLCMITGGRNLG 608 G K VP+LVTHDGRTIRYPDPLI ++ D+IKF+SGNLCMITGGRNLG Sbjct: 131 LGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLG 190 Query: 609 RVGTIVSRERHPGSFDIVHIKDSTGH 686 RVGT+V+RERHPGSFDIVHIKDS GH Sbjct: 191 RVGTVVNRERHPGSFDIVHIKDSQGH 216 Score = 119 bits (286), Expect = 8e-26 Identities = 55/64 (85%), Positives = 58/64 (90%) Frame = +2 Query: 41 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 220 MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G E Sbjct: 1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAE 60 Query: 221 S*KL 232 K+ Sbjct: 61 VTKI 64 >UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=137; Eukaryota|Rep: 40S ribosomal protein S4, X isoform - Homo sapiens (Human) Length = 263 Score = 228 bits (558), Expect = 9e-59 Identities = 100/147 (68%), Positives = 121/147 (82%) Frame = +3 Query: 249 KGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 428 K DGKVRTD TYPAGFMDV+SI+KT E FRLIYD KGRF +HRITPEEAKYKLCKV+++ Sbjct: 71 KIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIF 130 Query: 429 TGPKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TSQLRRLWDFIKFESGNLCMITGGRNLG 608 G K +P+LVTHD RTIRYPDPLIKV + ++ DFIKF++GNLCM+TGG NLG Sbjct: 131 VGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLG 190 Query: 609 RVGTIVSRERHPGSFDIVHIKDSTGHT 689 R+G I +RERHPGSFD+VH+KD+ G++ Sbjct: 191 RIGVITNRERHPGSFDVVHVKDANGNS 217 Score = 120 bits (289), Expect = 3e-26 Identities = 54/64 (84%), Positives = 59/64 (92%) Frame = +2 Query: 41 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 220 MARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+E Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60 Query: 221 S*KL 232 K+ Sbjct: 61 VKKI 64 >UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein S4, X isoform (LOC126235), mRNA; n=1; Takifugu rubripes|Rep: similar to 40S ribosomal protein S4, X isoform (LOC126235), mRNA - Takifugu rubripes Length = 291 Score = 142 bits (344), Expect(2) = 3e-53 Identities = 60/98 (61%), Positives = 77/98 (78%) Frame = +3 Query: 396 KYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TSQLRRLWDFIKFESGN 575 +YKLCKVK++ G K +P+LVTHD RTIRYPDPLIKV ++ DFIKF++ N Sbjct: 152 QYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTVRIDLDTGKITDFIKFDTSN 211 Query: 576 LCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHT 689 +CM+TGG NLGR+G I +RERHPGSFD+VH+KDSTG++ Sbjct: 212 MCMVTGGANLGRIGVITNRERHPGSFDVVHVKDSTGNS 249 Score = 118 bits (284), Expect = 1e-25 Identities = 53/63 (84%), Positives = 58/63 (92%) Frame = +2 Query: 44 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES 223 ARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+E Sbjct: 2 ARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEV 61 Query: 224 *KL 232 K+ Sbjct: 62 KKI 64 Score = 89.4 bits (212), Expect(2) = 3e-53 Identities = 41/50 (82%), Positives = 44/50 (88%) Frame = +3 Query: 249 KGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 398 K DGKVRTD TYP GFMDV+SI+KT E FRLIYDVKGRFT+HRIT EEAK Sbjct: 71 KIDGKVRTDITYPTGFMDVISIDKTGEHFRLIYDVKGRFTVHRITAEEAK 120 >UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis thaliana (Mouse-ear cress) Length = 262 Score = 202 bits (492), Expect = 8e-51 Identities = 92/144 (63%), Positives = 111/144 (77%) Frame = +3 Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 434 DGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G Sbjct: 73 DGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFG 132 Query: 435 PKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TSQLRRLWDFIKFESGNLCMITGGRNLGRV 614 K +PYL T+DGRTIRYPDPLIK + ++ +FIKF+ GN+ M+TGGRN GRV Sbjct: 133 QKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRV 192 Query: 615 GTIVSRERHPGSFDIVHIKDSTGH 686 G I +RE+H GSF+ +HI+DSTGH Sbjct: 193 GVIKNREKHKGSFETIHIQDSTGH 216 Score = 109 bits (261), Expect = 8e-23 Identities = 48/60 (80%), Positives = 53/60 (88%) Frame = +2 Query: 41 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 220 MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT E Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60 >UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal protein S4 - Entamoeba histolytica HM-1:IMSS Length = 326 Score = 173 bits (421), Expect = 3e-42 Identities = 78/147 (53%), Positives = 104/147 (70%) Frame = +3 Query: 249 KGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 428 K DGK+RTD YP GFMDV+SI +T E FRL+Y+ K RF + +T E+AK+KLCK+++ Sbjct: 71 KIDGKIRTDTRYPVGFMDVLSIPRTKENFRLMYNTKRRFCLVPLTAEQAKFKLCKIEKRV 130 Query: 429 TGPKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TSQLRRLWDFIKFESGNLCMITGGRNLG 608 G +PY+VTHDGRTIRYP P ++ + ++ DF+KF+ GN M+ GG +G Sbjct: 131 LGTGAIPYIVTHDGRTIRYPHPELQANDTIKLNLETGKIVDFVKFDIGNTAMMIGGNGMG 190 Query: 609 RVGTIVSRERHPGSFDIVHIKDSTGHT 689 RVG IV RE HPGSF+IVHIKD+ G+T Sbjct: 191 RVGVIVKREVHPGSFEIVHIKDAKGNT 217 Score = 101 bits (241), Expect = 2e-20 Identities = 42/60 (70%), Positives = 49/60 (81%) Frame = +2 Query: 41 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 220 MARGP+ HLKRLNAP WML KLGG +AP+PS GPH ++ECLPL++ LRNRL YAL G E Sbjct: 1 MARGPRHHLKRLNAPHHWMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYALNGRE 60 >UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing protein; n=1; Tetrahymena thermophila SB210|Rep: Ribosomal family S4e containing protein - Tetrahymena thermophila SB210 Length = 370 Score = 164 bits (398), Expect = 2e-39 Identities = 76/144 (52%), Positives = 97/144 (67%) Frame = +3 Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 434 DGKVR D YP G MDVV IEKT++ FR++YD KGRF + ++ EEAKYKL KV A G Sbjct: 185 DGKVRRDKGYPTGLMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIG 244 Query: 435 PKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TSQLRRLWDFIKFESGNLCMITGGRNLGRV 614 P +PY+VTHD RTIR+P+P IK+ ++ +F ESGN+C I G N+GRV Sbjct: 245 PNQIPYIVTHDSRTIRFPNPEIKIGDTLKYDLVNNKIENFAHLESGNVCYIQQGNNIGRV 304 Query: 615 GTIVSRERHPGSFDIVHIKDSTGH 686 G I E+H GSFDI H+KD+ G+ Sbjct: 305 GIIQHIEKHQGSFDICHVKDAKGN 328 Score = 62.1 bits (144), Expect = 1e-08 Identities = 39/88 (44%), Positives = 48/88 (54%), Gaps = 29/88 (32%) Frame = +2 Query: 44 ARGPKKHLKRLNAPKAWMLDKLGG-------------------------VYAPRPSTGP- 145 ARGPKKHLKR+NAPK+WML+KLGG +Y + +T P Sbjct: 83 ARGPKKHLKRINAPKSWMLNKLGGIWVITFFAFRLRKNDFITTIPKLKFIYFKKQATRPS 142 Query: 146 ---HKLRECLPLVIFLRNRLKYALTGNE 220 HKLRE LPL + L+ RL YAL G + Sbjct: 143 QGPHKLRESLPLSVLLKERLNYALNGRD 170 >UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED: similar to 40S ribosomal protein S4, X isoform - Canis familiaris Length = 240 Score = 164 bits (398), Expect = 2e-39 Identities = 69/114 (60%), Positives = 89/114 (78%) Frame = +3 Query: 348 DVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVKIPSS*T 527 D KGRF +HRITPEEAKYKL KV+++ G K +P+LVTHD RTIRYPDPLIK+ Sbjct: 76 DTKGRFAVHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKMNDTIQID 135 Query: 528 SQLRRLWDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHT 689 + ++ DF KF++GNLCM+TGG NLGR+G I +RE HPGSFD+VH+KD+ G++ Sbjct: 136 LETGKITDFFKFDTGNLCMVTGGTNLGRIGVITNRENHPGSFDVVHVKDANGNS 189 Score = 110 bits (265), Expect = 3e-23 Identities = 49/64 (76%), Positives = 55/64 (85%) Frame = +2 Query: 41 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 220 MA P+KHLK + APK WMLDKL GV+AP PSTGPHKLRECLPL+IFLRNRLKYALTG+E Sbjct: 1 MAHSPRKHLKHVAAPKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60 Query: 221 S*KL 232 K+ Sbjct: 61 VKKI 64 >UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal protein S4, X isoform; n=1; Macaca mulatta|Rep: PREDICTED: similar to 40S ribosomal protein S4, X isoform - Macaca mulatta Length = 244 Score = 160 bits (389), Expect = 3e-38 Identities = 73/147 (49%), Positives = 100/147 (68%) Frame = +3 Query: 249 KGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 428 K DGK+RTD P MDV+SI+K E F LIY + RF +HRITPEE KYKLCK++++ Sbjct: 81 KVDGKIRTDNNLPYWIMDVISIDKMGEDFCLIYGINRRFALHRITPEEVKYKLCKMRKIF 140 Query: 429 TGPKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TSQLRRLWDFIKFESGNLCMITGGRNLG 608 K +P+LV HD T+R+PD LIKV + ++ +KF++GNLC++TGG N G Sbjct: 141 VRAKGIPHLVIHDIHTVRHPDSLIKVNDTIQIDLETGKI-TALKFDTGNLCLVTGGGNWG 199 Query: 609 RVGTIVSRERHPGSFDIVHIKDSTGHT 689 R+G I +RERHP SFD H+KD+ ++ Sbjct: 200 RIGVITNRERHPVSFDTFHVKDANSNS 226 Score = 97.1 bits (231), Expect = 4e-19 Identities = 47/67 (70%), Positives = 56/67 (83%) Frame = +2 Query: 32 LSNMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALT 211 ++ +A GPK+HLKR+ A + WMLDKL GV+A RPSTGPHKLRECLP IFLRNRLKYALT Sbjct: 9 ITAVAFGPKQHLKRVAALQHWMLDKLTGVFAARPSTGPHKLRECLP-HIFLRNRLKYALT 67 Query: 212 GNES*KL 232 G+E K+ Sbjct: 68 GDEVKKI 74 >UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4; Trichomonas vaginalis G3|Rep: 40S ribosomal protein S4-C, putative - Trichomonas vaginalis G3 Length = 269 Score = 156 bits (378), Expect = 6e-37 Identities = 72/145 (49%), Positives = 98/145 (67%) Frame = +3 Query: 249 KGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 428 K DGKVRT+ YP G MDV+ + K+NELFR+IYD KGRF +H I +EA +KL +V + Sbjct: 85 KVDGKVRTNYRYPTGLMDVIELGKSNELFRIIYDCKGRFCVHHIEAKEASFKLLRVNQFK 144 Query: 429 TGPKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TSQLRRLWDFIKFESGNLCMITGGRNLG 608 G K +P++VTHDGRTI Y DP ++V + + IKF+ G++ M+T G N+G Sbjct: 145 IGAKGIPHVVTHDGRTISYVDPSVRVHDALKFNIKTGEVESVIKFKVGDVAMVTAGGNVG 204 Query: 609 RVGTIVSRERHPGSFDIVHIKDSTG 683 RVGTI E+ SFDIVH+KD++G Sbjct: 205 RVGTIQKIEKQMASFDIVHLKDTSG 229 Score = 87.0 bits (206), Expect = 4e-16 Identities = 43/70 (61%), Positives = 49/70 (70%) Frame = +2 Query: 14 SFSI*YLSNMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNR 193 SFS L M R + HLKRL AP W+L K G +A PSTGPHKLRECLP+ IFLR+R Sbjct: 6 SFSWSVLFLMPRCQRFHLKRLTAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIFLRDR 65 Query: 194 LKYALTGNES 223 LKYALT E+ Sbjct: 66 LKYALTAKEA 75 >UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia theta|Rep: 40S ribosomal protein S4 - Guillardia theta (Cryptomonas phi) Length = 257 Score = 146 bits (354), Expect = 4e-34 Identities = 70/143 (48%), Positives = 95/143 (66%) Frame = +3 Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 434 DGKVR D +PAG MDV+SI+ T E +R++YD G F +HRIT +E+ +KLCKV RV+ G Sbjct: 73 DGKVRADKNFPAGVMDVISIKTTKENYRVLYDNVGHFFLHRITIKESMFKLCKVIRVSIG 132 Query: 435 PKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TSQLRRLWDFIKFESGNLCMITGGRNLGRV 614 K +PY+VTHDGRTIR+P+ LIK ++ DFIKF G+LC++ G N+GR+ Sbjct: 133 SKGIPYIVTHDGRTIRFPNLLIKSNDSIVLDLLNNKVIDFIKFSIGSLCVVIKGSNIGRI 192 Query: 615 GTIVSRERHPGSFDIVHIKDSTG 683 G ++ GS IV +KD G Sbjct: 193 GVFINTIGGQGSDSIVCLKDFNG 215 Score = 89.4 bits (212), Expect = 7e-17 Identities = 38/61 (62%), Positives = 49/61 (80%) Frame = +2 Query: 41 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 220 M+RG KKH KRLNAPK W+L+KLGG++APR S+GPHK + +PLVI +RN+LKY+ E Sbjct: 1 MSRGIKKHYKRLNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRE 60 Query: 221 S 223 S Sbjct: 61 S 61 >UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania major Length = 273 Score = 138 bits (334), Expect = 1e-31 Identities = 68/143 (47%), Positives = 87/143 (60%) Frame = +3 Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 434 D R D YPAGFMDVV I KT + FRL+YDVKGRF + ++ EA+ KL KV + T Sbjct: 70 DNHPRRDGKYPAGFMDVVEIPKTGDRFRLMYDVKGRFALVNLSEAEAQIKLMKVVNLYTA 129 Query: 435 PKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TSQLRRLWDFIKFESGNLCMITGGRNLGRV 614 VP VTHDG IRYPDP + + ++ D IK G ++TGG N GR+ Sbjct: 130 TGRVPVAVTHDGHRIRYPDPHTSIGDTIVYNVKEKKCVDLIKNRQGKAVIVTGGANRGRI 189 Query: 615 GTIVSRERHPGSFDIVHIKDSTG 683 G IV E HPG+F+I H+KD++G Sbjct: 190 GEIVKVECHPGAFNIAHLKDASG 212 Score = 94.3 bits (224), Expect = 3e-18 Identities = 41/55 (74%), Positives = 45/55 (81%) Frame = +2 Query: 56 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 220 KKHLKRL APK WML KL GV+APRP GPHKLRECLPL++ +RNRLKYAL E Sbjct: 3 KKHLKRLYAPKDWMLSKLTGVFAPRPRPGPHKLRECLPLLVIIRNRLKYALNARE 57 >UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 - Encephalitozoon cuniculi Length = 268 Score = 93.1 bits (221), Expect = 6e-18 Identities = 50/147 (34%), Positives = 86/147 (58%) Frame = +3 Query: 249 KGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 428 K +G+VRT+ +P G DVVSIEKT E FR++Y+V +F +HRI+ EEA Y+L KV + Sbjct: 71 KVNGRVRTNSHFPVGLFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKVTKKY 130 Query: 429 TGPKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TSQLRRLWDFIKFESGNLCMITGGRNLG 608 + +PY+V+ G +IR+ DP I + +++ ++ ++I + ++ G+ G Sbjct: 131 EN-QGIPYIVSSCGLSIRFCDPAIDLGYTIKISNETSKVIEYIVPGPDKVIFVSRGKARG 189 Query: 609 RVGTIVSRERHPGSFDIVHIKDSTGHT 689 RVG +++ G + + D G+T Sbjct: 190 RVG-VINTISTQGKETVYGMTDFAGNT 215 Score = 68.1 bits (159), Expect = 2e-10 Identities = 29/55 (52%), Positives = 37/55 (67%) Frame = +2 Query: 41 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 205 M G + HLKR APK+WMLDK GG +A P++GPHK EC+PL + L+YA Sbjct: 1 MPTGHRDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYA 55 >UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermoplasma|Rep: 30S ribosomal protein S4e - Thermoplasma acidophilum Length = 235 Score = 76.2 bits (179), Expect = 7e-13 Identities = 48/143 (33%), Positives = 72/143 (50%), Gaps = 1/143 (0%) Frame = +3 Query: 249 KGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 428 K DGK + + GFMDV+ I E +R++Y+ +G + + T E A KL KV+ Sbjct: 67 KVDGKTVREKKFAVGFMDVIEIN--GESYRVVYNDQGALVLMKETKERASMKLLKVRSKV 124 Query: 429 TGPKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TSQLRRLWDFIKFESGNLCMITGGRNLG 608 P N L THDGRT D KV + + ++ + IK + GN IT G ++ Sbjct: 125 IAPGNRIQLGTHDGRTFITDDKSKKVGDVWAVSVPDMKISEIIKMQPGNKAYITAGSHVN 184 Query: 609 RVGTIVSRERHPG-SFDIVHIKD 674 + GTI E G S ++VH ++ Sbjct: 185 QTGTISKIEAKEGSSANLVHFQE 207 >UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfurococcales|Rep: 30S ribosomal protein S4e - Aeropyrum pernix Length = 253 Score = 74.9 bits (176), Expect = 2e-12 Identities = 55/159 (34%), Positives = 80/159 (50%), Gaps = 15/159 (9%) Frame = +3 Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLI-YDVKGRFTIHRITPEEAKYKLCKVKRVAT 431 DG VR D +P GFMDV+ + T E FR++ Y VK F +H I EE K +++ T Sbjct: 74 DGVVRKDYKFPVGFMDVIEVVDTGEKFRMLPYPVK-FFKLHPIPEEEGDLKPVRIENKTT 132 Query: 432 GPKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TSQLRRLWD-------------FIKFESG 572 L HDGR I L++VK P + + R D IKF G Sbjct: 133 VKGGHVQLNLHDGRNI-----LVRVKDPRNPVEDVYRTMDTLLITVPGQEIKGHIKFGEG 187 Query: 573 NLCMITGGRNLGRVGTIVSRERHPG-SFDIVHIKDSTGH 686 + +I GGRN+GRVG + S ++ G +V ++D++G+ Sbjct: 188 AIAIIVGGRNVGRVGVVKSVQKGWGRKRTLVTLEDASGN 226 Score = 50.4 bits (115), Expect = 4e-05 Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%) Frame = +2 Query: 41 MAR-GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGN 217 MAR G ++ LK L AP+ W + + +A +P GPH + LPL++ +RN L YA T Sbjct: 1 MARMGGQRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAR 60 Query: 218 ES*KL 232 E+ KL Sbjct: 61 EARKL 65 >UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobacteriaceae|Rep: Ribosomal protein S4e - Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) Length = 242 Score = 70.1 bits (164), Expect = 5e-11 Identities = 40/129 (31%), Positives = 69/129 (53%), Gaps = 6/129 (4%) Frame = +3 Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 434 DG+V D +P GFMD++ I KT E++R++ D KGR +++I EE KLCK+ +T Sbjct: 74 DGRVIKDYKFPVGFMDIIEIPKTGEVYRVLLDKKGRLQLNKI--EENDSKLCKIVNKSTI 131 Query: 435 PKNVPYLVTHDGRTIRYPD------PLIKVKIPSS*TSQLRRLWDFIKFESGNLCMITGG 596 + HDG+ + + +I +K+P + + + + G +ITGG Sbjct: 132 KGGKIQVNLHDGKNVIIDENDYNVGDVIDLKVPD------HEINEVFELKEGACVLITGG 185 Query: 597 RNLGRVGTI 623 ++ G +GT+ Sbjct: 186 KHTGELGTV 194 Score = 46.4 bits (105), Expect = 7e-04 Identities = 21/66 (31%), Positives = 34/66 (51%) Frame = +2 Query: 50 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*K 229 G +KHLK APK W + + +PS G H + L L + +R+ LK A E+ + Sbjct: 5 GSRKHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKR 64 Query: 230 L*NNAS 247 + N+ + Sbjct: 65 IINSGN 70 >UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowiella natans|Rep: 40S ribosomal protein S4 - Bigelowiella natans (Pedinomonas minutissima) (Chlorarachnion sp.(strain CCMP 621)) Length = 242 Score = 66.1 bits (154), Expect = 8e-10 Identities = 36/143 (25%), Positives = 67/143 (46%) Frame = +3 Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 434 +GK +P MD +S N+ +R++ G+ T++ I E K+CKV ++ Sbjct: 73 NGKKCLSHKFPISLMDTISFPLANKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINA 132 Query: 435 PKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TSQLRRLWDFIKFESGNLCMITGGRNLGRV 614 ++T D R ++ IKV+ + + +KFE G+LC+IT G++LG + Sbjct: 133 SSKNKIIITDDLRELKINYAKIKVEDSLLIKTINDEIVYALKFEVGSLCLITRGKHLGTI 192 Query: 615 GTIVSRERHPGSFDIVHIKDSTG 683 I + ++H++ G Sbjct: 193 AVIKEIRKTKSLRKMIHLEKIDG 215 Score = 32.7 bits (71), Expect = 8.7 Identities = 18/64 (28%), Positives = 33/64 (51%) Frame = +2 Query: 41 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 220 MA+G KKH KR+++ K G++ + S+GPH + + L+ ++ A E Sbjct: 1 MAKGIKKHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQE 60 Query: 221 S*KL 232 + K+ Sbjct: 61 AQKV 64 >UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methanopyrus kandleri|Rep: 30S ribosomal protein S4e - Methanopyrus kandleri Length = 260 Score = 65.3 bits (152), Expect = 1e-09 Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 15/158 (9%) Frame = +3 Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 434 DG VR +P +P G MDVV I +T + +R++ + R + I+ EEA+ K+C++K Sbjct: 77 DGVVRKEPKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYV 136 Query: 435 PKNVPYLVTHDGRT--IRYPDPL------------IKVKIPSS*TSQLRRLWDFIKFESG 572 + HDG+ + DP + +++P + + ++ D I FE G Sbjct: 137 RGGNLQITMHDGKNWLVEIEDPTDPKEDVYSVGDSLVLELPEPDSGESWKVVDHIPFEEG 196 Query: 573 NLCMITGGRNLGRVGTIVSRERHPG-SFDIVHIKDSTG 683 GR+ G VG +V + G D++ +++ G Sbjct: 197 VWVYAMTGRHSGEVGRVVEIQTFEGPQEDLITVENPEG 234 Score = 62.5 bits (145), Expect = 9e-09 Identities = 30/62 (48%), Positives = 41/62 (66%), Gaps = 1/62 (1%) Frame = +2 Query: 50 GPKKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES* 226 GPK+H+KRL AP AW + K GG +APRP GPH + +PL+I +R+ L YA E+ Sbjct: 7 GPKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREAR 66 Query: 227 KL 232 K+ Sbjct: 67 KI 68 >UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E, central - Thermofilum pendens (strain Hrk 5) Length = 251 Score = 63.3 bits (147), Expect = 5e-09 Identities = 45/152 (29%), Positives = 70/152 (46%), Gaps = 9/152 (5%) Frame = +3 Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 434 DG+V TD +P G MDV+ I + +R++ D + I PEEA YKL +++R T Sbjct: 76 DGRVVTDYKFPVGLMDVLHIIPEEKYYRVVPDPARKLRFVEIKPEEAGYKLAQIRRKMTV 135 Query: 435 PKNVPYLVTHDGRT--IRYPDPLIKVKIPSS*TSQL------RRLWDFIKFESGNLCMIT 590 HDGR IR I L + + + FE G L ++ Sbjct: 136 KNGDLQFTLHDGRNVLIRKGSEAYSTAISYKTYDALLITIPRQSIVSHVPFEVGTLAIVV 195 Query: 591 GGRNLGRVGTI-VSRERHPGSFDIVHIKDSTG 683 GRN+G +G I ++ S +V ++D++G Sbjct: 196 DGRNVGFMGRINAIQQVFKRSRALVELEDASG 227 Score = 46.8 bits (106), Expect = 5e-04 Identities = 22/64 (34%), Positives = 34/64 (53%) Frame = +2 Query: 32 LSNMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALT 211 + +G +HL+R AP W + + V+ +PS GPH L +P+ I LR+ YA T Sbjct: 1 MGRKVKGSLRHLRRSVAPPFWPIKRKEYVWTVKPSPGPHSLLSSIPIGIVLRDVFGYAKT 60 Query: 212 GNES 223 E+ Sbjct: 61 MKEA 64 >UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryarchaeota|Rep: 30S ribosomal protein S4e - Methanococcus maripaludis Length = 244 Score = 62.9 bits (146), Expect = 7e-09 Identities = 28/62 (45%), Positives = 40/62 (64%) Frame = +2 Query: 47 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES* 226 +GP+KHLKRL AP W L + + RPS GPH + + LPL++ +R+ LKYA E+ Sbjct: 4 KGPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAK 63 Query: 227 KL 232 K+ Sbjct: 64 KI 65 Score = 56.8 bits (131), Expect = 5e-07 Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 10/153 (6%) Frame = +3 Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV--KRVA 428 DG R + +PAG MDV+SI + +E + +++D GR ++ + ++ KLCK+ K V Sbjct: 74 DGLKRKEYKHPAGLMDVLSIPEMDETYLVLFDESGRISLKK--TDKTDVKLCKIVNKTVV 131 Query: 429 TGPKNVPYLVTHDGRT--IRYPDPL-IKVKIPSS*TSQL-----RRLWDFIKFESGNLCM 584 G N+ L HDGR ++ D + + + S L + + + F G L Sbjct: 132 KG-GNI-QLNLHDGRNQIVKVSDAAKAEEDVYKTGDSVLISIPEQSIAGHVAFGEGKLAY 189 Query: 585 ITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTG 683 ITGG+++G IV E DIV +++ G Sbjct: 190 ITGGKHVGEFAKIVEVENRALYSDIVTLENKDG 222 >UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolobaceae|Rep: 30S ribosomal protein S4e - Sulfolobus acidocaldarius Length = 244 Score = 62.5 bits (145), Expect = 9e-09 Identities = 44/128 (34%), Positives = 60/128 (46%), Gaps = 5/128 (3%) Frame = +3 Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 434 DGKVR D YP G MDVV I + R+I D T I+ E+AKYK ++ T Sbjct: 68 DGKVRRDYKYPVGLMDVVEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIMNKTTL 127 Query: 435 PKNVPYLVTHDGRTIRYP-DPLIKVKIPSS*TSQL----RRLWDFIKFESGNLCMITGGR 599 V L DGR I + L + +P+ T ++ +++ + G MI GGR Sbjct: 128 KSGVLQLNLEDGRNILLKGEELSQYNLPTLTTLKIELPEQKITTAYTIKEGVYAMIIGGR 187 Query: 600 NLGRVGTI 623 N G G I Sbjct: 188 NAGLHGKI 195 Score = 35.1 bits (77), Expect = 1.6 Identities = 19/54 (35%), Positives = 27/54 (50%) Frame = +2 Query: 62 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES 223 H+ R AP + K + R GPHK++E +PL I L+ LK T E+ Sbjct: 3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREA 56 >UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139; n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical protein Faci_03001139 - Ferroplasma acidarmanus fer1 Length = 241 Score = 62.1 bits (144), Expect = 1e-08 Identities = 42/130 (32%), Positives = 62/130 (47%), Gaps = 1/130 (0%) Frame = +3 Query: 249 KGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VKRV 425 K DG++ D +P GFMDV+SI+ + ++YD KG+ I + P KL K VK+ Sbjct: 68 KVDGRIVKDRRFPVGFMDVLSIDTLENDYIIVYDRKGKLVIRQNAPGNKGLKLFKVVKKT 127 Query: 426 ATGPKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TSQLRRLWDFIKFESGNLCMITGGRNL 605 G + L HDG+TI I + + +K G+ ITGG ++ Sbjct: 128 IIGTGKI-QLGFHDGKTIVTDRKDINTSDVLLMKIPDLEIENVLKIAEGDKVFITGGSHV 186 Query: 606 GRVGTIVSRE 635 G + TI S E Sbjct: 187 GELATIKSIE 196 >UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga maquilingensis IC-167|Rep: Ribosomal protein S4E - Caldivirga maquilingensis IC-167 Length = 237 Score = 61.3 bits (142), Expect = 2e-08 Identities = 42/130 (32%), Positives = 59/130 (45%), Gaps = 3/130 (2%) Frame = +3 Query: 249 KGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 428 K DGKVR D YP G MDV+ + NE +R+I D RI EA K+C+++ Sbjct: 66 KVDGKVRRDYKYPVGLMDVIELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIEDKT 125 Query: 429 TGPKNVPYLVTHDGRTIRY-PDPLIKVKIPSS*TSQLR--RLWDFIKFESGNLCMITGGR 599 L HDGR I D K + S L +L D+ + + G Sbjct: 126 MVKAGKIQLNLHDGRNIIVDQDEGRKYETLGSVVVNLEDGKLMDYYPMQPNQYVIAFNGV 185 Query: 600 NLGRVGTIVS 629 N+GR GT+++ Sbjct: 186 NVGRHGTLIN 195 Score = 47.2 bits (107), Expect = 4e-04 Identities = 19/54 (35%), Positives = 32/54 (59%) Frame = +2 Query: 62 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES 223 HL+R +P+ W +++ G ++ +PS GPH +PL + LR+ YA T E+ Sbjct: 3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREA 56 >UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarchaeota|Rep: 30S ribosomal protein S4e - Methanosarcina mazei (Methanosarcina frisia) Length = 235 Score = 61.3 bits (142), Expect = 2e-08 Identities = 42/143 (29%), Positives = 66/143 (46%), Gaps = 1/143 (0%) Frame = +3 Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 434 DG R D +P G DV+++ NE +R++ D KGR ++++ E KLC++ T Sbjct: 68 DGISRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLVLYKLN-ETNVNKLCRINNKTTV 126 Query: 435 PKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TSQLRRLWDFIKFESGNLCMITGGRNLGRV 614 L +DG I + K + + + +KFE GNL M+ GG++ G Sbjct: 127 KGGKIQLNLNDGTNILGSND-YGTKDSLILSIPDKHVVKHLKFEVGNLAMVIGGQHSGET 185 Query: 615 GTIVS-RERHPGSFDIVHIKDST 680 G I+ RE + V I T Sbjct: 186 GKIMEIREVKSSRHNTVMISGET 208 Score = 39.9 bits (89), Expect = 0.057 Identities = 17/46 (36%), Positives = 25/46 (54%) Frame = +2 Query: 62 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLK 199 H KRL+ PK+W + + G + GPH LPL + +R+ LK Sbjct: 3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLK 48 >UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococcoides burtonii DSM 6242|Rep: Ribosomal protein S4E - Methanococcoides burtonii (strain DSM 6242) Length = 236 Score = 56.0 bits (129), Expect = 8e-07 Identities = 36/123 (29%), Positives = 61/123 (49%) Frame = +3 Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 434 DG R D +P G MD+++I N +R++ D K R ++++ A KLC+++ + Sbjct: 69 DGVARKDLRFPVGLMDIITIPLNNVEYRVMLDGKSRLVLNKLDGTGAD-KLCRIEGKTSI 127 Query: 435 PKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TSQLRRLWDFIKFESGNLCMITGGRNLGRV 614 + + +DG I K + +++ IK+E GNL MI GG + G V Sbjct: 128 KEGKIQMRLNDGVNI-IGSNNYNTKDSIILSVPDKKVVKHIKYEVGNLAMIVGGSHAGEV 186 Query: 615 GTI 623 G+I Sbjct: 187 GSI 189 Score = 39.9 bits (89), Expect = 0.057 Identities = 15/45 (33%), Positives = 24/45 (53%) Frame = +2 Query: 62 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRL 196 H KR++ PK+W + K + GPH + +PL + LR+ L Sbjct: 4 HQKRISVPKSWQISKKSNKWITSTRPGPHNRLQSIPLAVILRDML 48 >UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Methanomicrobiales|Rep: Ribosomal protein S4E, central - Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) Length = 242 Score = 56.0 bits (129), Expect = 8e-07 Identities = 45/150 (30%), Positives = 65/150 (43%), Gaps = 7/150 (4%) Frame = +3 Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 434 +G+ D G D+VSI K + +R+ DVKG I E AK +LCK++ T Sbjct: 68 NGRACKDSRMGLGVFDIVSIPKLGKHYRIQLDVKGNLVAIEIPAESAKTRLCKIRNKTTV 127 Query: 435 PKNVPYLVTHDGRTIRYPDPLIKVK----IPSS*TSQLR-RLWDFIKFESGNLCMITGGR 599 L G + D K K + + R R+ D + GN+ MI GG+ Sbjct: 128 KGGKVQLNFAFGANV-LADNTYKAKDSVVVTLGTDGEDRFRIVDHFPYAEGNVAMIVGGK 186 Query: 600 NLGRVGTIVSRERHPGSF--DIVHIKDSTG 683 + G+VG IV R S ++ DS G Sbjct: 187 HSGKVGRIVEIIRTASSVPNHVILTDDSAG 216 Score = 35.1 bits (77), Expect = 1.6 Identities = 19/58 (32%), Positives = 31/58 (53%) Frame = +2 Query: 59 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL 232 K+LKRL AP +W + K + + + GPH LP+ ++LR + A +E K+ Sbjct: 3 KYLKRLVAPGSWHIPKKVQKFVMKTAPGPHN-AGALPVGVWLREHIGLAQNASEVKKI 59 >UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarchaeota|Rep: 30S ribosomal protein S4E - Uncultured methanogenic archaeon RC-I Length = 234 Score = 55.6 bits (128), Expect = 1e-06 Identities = 35/123 (28%), Positives = 56/123 (45%) Frame = +3 Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 434 DGKVR D Y G D +SI N +R++ + G+F H + +A K+CK+ Sbjct: 70 DGKVRKDYRYTVGMFDTISIPAINANYRVVIGMDGKF--HLVPVTDASAKICKIVNKTAL 127 Query: 435 PKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TSQLRRLWDFIKFESGNLCMITGGRNLGRV 614 L HDG T+ + K K R++ + G+L M+T G++ G + Sbjct: 128 RGGKIQLNLHDGTTMIASND-YKTKDSVILKMPERKIDQHFTYAVGSLVMVTEGKHSGEI 186 Query: 615 GTI 623 G + Sbjct: 187 GKV 189 Score = 42.3 bits (95), Expect = 0.011 Identities = 20/57 (35%), Positives = 31/57 (54%) Frame = +2 Query: 62 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL 232 HLKR+ AP+ W + + + +P G H +PLV+ LR+ LK A +E K+ Sbjct: 5 HLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKI 61 >UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e - Nanoarchaeum equitans Length = 234 Score = 54.8 bits (126), Expect = 2e-06 Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 1/124 (0%) Frame = +3 Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VKRVAT 431 DG+ D +P G DV++I + NE +R++ D +G+ + +I EEA K K +++V+ Sbjct: 74 DGRPIKDYKFPVGLFDVLAIPEINEYYRVLLDERGKLYLKKIDKEEANIKYGKIIRKVSV 133 Query: 432 GPKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TSQLRRLWDFIKFESGNLCMITGGRNLGR 611 + Y +T DGRT D K ++ + I E I G++ GR Sbjct: 134 RGGKIQYTLT-DGRTF-LGDNSYKTHYGVVYEIPNFKIREVIPLEKDRKAYIIRGKHTGR 191 Query: 612 VGTI 623 +G I Sbjct: 192 IGVI 195 Score = 41.5 bits (93), Expect = 0.019 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Frame = +2 Query: 56 KKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL 232 K+HL+ L P+ W + K G + +PS GPH +P+ ++LR+ L A E L Sbjct: 6 KRHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYL 65 Query: 233 *NN 241 NN Sbjct: 66 LNN 68 >UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum aerophilum Length = 238 Score = 54.4 bits (125), Expect = 2e-06 Identities = 27/55 (49%), Positives = 35/55 (63%), Gaps = 1/55 (1%) Frame = +2 Query: 62 HLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES 223 HL+R AP W + K GGV+ RPS GPH L LPL + +R+ LKYA T +E+ Sbjct: 3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEA 57 Score = 51.6 bits (118), Expect = 2e-05 Identities = 40/128 (31%), Positives = 60/128 (46%), Gaps = 3/128 (2%) Frame = +3 Query: 249 KGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 428 K DG VR D +P G MDV+ I T E++R++ D + + I+ EEA KL +V+ Sbjct: 67 KVDGVVRRDYKFPVGLMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRVEGKT 126 Query: 429 TGPKNVPYLVTHDGRT-IRYPDPLIKVKIPSS*TSQLRR--LWDFIKFESGNLCMITGGR 599 L HDGR I + ++K S LR + I + G ++ G Sbjct: 127 MVKGGRIQLHFHDGRNLITTLEAGKQIKTFDSVLYDLRNKAIKAHIPLKLGVNAVVIHGS 186 Query: 600 NLGRVGTI 623 N+G GT+ Sbjct: 187 NVGFSGTL 194 >UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental samples|Rep: Ribosomal protein S4 - uncultured marine group II euryarchaeote DeepAnt-JyKC7 Length = 232 Score = 52.8 bits (121), Expect = 8e-06 Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 5/132 (3%) Frame = +3 Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 434 DG++ TD G MDV+++ + + FR I DV G+ I+ + A KLC+V +T Sbjct: 70 DGRIETDLGRGVGLMDVLTVGEDS--FRCILDVNGKLRYRSISDKAAASKLCRVMGKSTI 127 Query: 435 PKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TSQLRRLWD-----FIKFESGNLCMITGGR 599 + HDGR I D K+ S + + L D F G +TGG Sbjct: 128 TDGKTQIHLHDGRNILVSD----AKLYDSGDTLVISLPDQSVAGHHPFSKGATAYLTGGS 183 Query: 600 NLGRVGTIVSRE 635 ++G +VSR+ Sbjct: 184 HIGITAKVVSRD 195 Score = 42.7 bits (96), Expect = 0.008 Identities = 17/48 (35%), Positives = 28/48 (58%) Frame = +2 Query: 62 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 205 H+KRL P++W L + ++ +P+ G H C+PL + LR+ L A Sbjct: 5 HMKRLTMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPLGVILRDVLDLA 52 >UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1; Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA sequence - Ostreococcus tauri Length = 197 Score = 51.2 bits (117), Expect = 2e-05 Identities = 40/128 (31%), Positives = 60/128 (46%), Gaps = 2/128 (1%) Frame = -3 Query: 677 GVLDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQVPRLKLDEVP*SS*LRCLTGWN--LD 504 GVL VHN EG + LA D V + DH Q ++LD + +R N Sbjct: 68 GVLQVHNFEGTDVLLAALDHPDATGVVTTGDHAQSADVELDRI--GDLVRRDVDHNGVTL 125 Query: 503 FDKWVWVADGAAIMRYQVRNILRSGRHTLDFTQLVLSLLRGDTVDCESALNIID*TKQFI 324 D + V +GAA+++ R+ L QLVL D V ES+L ++D + FI Sbjct: 126 LDHGIRVTNGAAVVQTDARHALVPELLAPHLAQLVLRFDSLDAVHNESSLGVVDEPEVFI 185 Query: 323 SLLN*DNI 300 +L + D++ Sbjct: 186 ALFDGDDV 193 >UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picrophilus torridus|Rep: 30S ribosomal protein S4e - Picrophilus torridus Length = 234 Score = 49.2 bits (112), Expect = 9e-05 Identities = 45/147 (30%), Positives = 66/147 (44%), Gaps = 7/147 (4%) Frame = +3 Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 434 DGKV + GFMD +++ + L + YD KG+ I E KL +VK Sbjct: 69 DGKVVKERRRGIGFMDTLTVSGNDYL--VSYDRKGKLVILPKPGETKGLKLLRVKGKTYV 126 Query: 435 PKNVPYLVTHDGRTIRYPDPLIK------VKIPSS*TSQLRRLWDFIKFESGNLCMITGG 596 + HDG T+ IK VKIP + + D +KF GN ITGG Sbjct: 127 KGGRIQISFHDGSTMVTDRKDIKNGDSVLVKIPK------KEIVDVLKFAPGNRVFITGG 180 Query: 597 RNLGRVGTIVSRE-RHPGSFDIVHIKD 674 ++G + TI S E + ++VH+ + Sbjct: 181 SHVGEIATIKSIEIKSSSGENMVHMNE 207 >UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobacteriaceae|Rep: 30S ribosomal protein S4E - Haloarcula marismortui (Halobacterium marismortui) Length = 234 Score = 42.7 bits (96), Expect = 0.008 Identities = 33/133 (24%), Positives = 54/133 (40%), Gaps = 1/133 (0%) Frame = +3 Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 434 +GK +D P G D+++ + E +R+ GR + I P+ A+ KL K+ Sbjct: 68 NGKAISDEERPVGMFDILAFTEREEYYRVFPGEGGRLALTAIDPDAAQSKLGKIVTKTHV 127 Query: 435 PKNVPYLVTHDGRTIRYPDPLIKVKIPSS*T-SQLRRLWDFIKFESGNLCMITGGRNLGR 611 L HDG T+ D S ++ + ++E G L G + G Sbjct: 128 SGGDVQLGLHDGETLIVEDDQTYDAGDSIVVGNEDGEVVAHFEYEEGALVTAVDGAHAGE 187 Query: 612 VGTIVSRERHPGS 650 VG + + PGS Sbjct: 188 VGEVEEIQVTPGS 200 Score = 37.1 bits (82), Expect = 0.40 Identities = 17/48 (35%), Positives = 27/48 (56%) Frame = +2 Query: 62 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 205 H KRL+ P +W +++ + + GPH +PL+I LR+ L YA Sbjct: 4 HQKRLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYA 50 >UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Methanocorpusculum labreanum Z|Rep: Ribosomal protein S4E, central - Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) Length = 239 Score = 40.7 bits (91), Expect = 0.033 Identities = 20/55 (36%), Positives = 31/55 (56%) Frame = +2 Query: 68 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL 232 KR+ AP AW + + Y S+GPH LP+ I+LR+ +++AL E K+ Sbjct: 5 KRMTAPDAWQIARKESKYVVSTSSGPHD-GSALPIGIWLRDHMQFALNTKEVRKI 58 Score = 35.1 bits (77), Expect = 1.6 Identities = 17/59 (28%), Positives = 30/59 (50%) Frame = +3 Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 431 +G + TD D++S K ++ + ++ D KGR + I+ + AK +L KV T Sbjct: 67 NGHIVTDEHIGIDVFDIISFPKIDKHYMILVDEKGRHNEYEISADAAKLQLVKVANKTT 125 >UniRef50_Q57WH1 Cluster: Putative uncharacterized protein; n=6; Trypanosoma|Rep: Putative uncharacterized protein - Trypanosoma brucei Length = 1760 Score = 34.7 bits (76), Expect = 2.2 Identities = 17/70 (24%), Positives = 36/70 (51%) Frame = +3 Query: 219 NPENCETTPHKGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 398 N E T +G+ +RTDP+Y + V+ +++ L +I++++ F+ + + K Sbjct: 1039 NEELRRETRRRGECILRTDPSYHSAPSAVIKLQQLIRLEEIIFNMRNNFSNELLKLRDEK 1098 Query: 399 YKLCKVKRVA 428 +LC V+ Sbjct: 1099 ERLCGTLNVS 1108 >UniRef50_Q890E3 Cluster: Acetyltransferase (GNAT) family; n=1; Lactobacillus plantarum|Rep: Acetyltransferase (GNAT) family - Lactobacillus plantarum Length = 163 Score = 33.9 bits (74), Expect = 3.8 Identities = 18/49 (36%), Positives = 24/49 (48%) Frame = +1 Query: 418 SVWRPDLRMFRTW*RMMAAPSATQTHLSKSRFHPVRHRNYEDYGTSSSL 564 + WRP+ R W M+ A +A + F P RH NYE +G SL Sbjct: 46 ATWRPE----RRWQNMLLAMTADGEVVGVCTFGPARHANYEGWGELYSL 90 >UniRef50_A6E8K7 Cluster: Putative uncharacterized protein; n=1; Pedobacter sp. BAL39|Rep: Putative uncharacterized protein - Pedobacter sp. BAL39 Length = 195 Score = 33.9 bits (74), Expect = 3.8 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 3/67 (4%) Frame = -2 Query: 228 FQDSFPVKAYFRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAFKRFK---CF 58 F F KA FR+ +RK+ G+H+ +D A+T PSL H KR++ F Sbjct: 11 FLGRFFFKARFRKLIRKL--GRHTEVYLVDIDNTLAHTWPSLQQRHYSAENKRYRSLPIF 68 Query: 57 LGPRAML 37 +G R+ L Sbjct: 69 IGMRSYL 75 >UniRef50_A2D8S3 Cluster: Surface antigen BspA-like; n=4; Trichomonas vaginalis G3|Rep: Surface antigen BspA-like - Trichomonas vaginalis G3 Length = 1474 Score = 33.9 bits (74), Expect = 3.8 Identities = 24/76 (31%), Positives = 41/76 (53%) Frame = +3 Query: 399 YKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TSQLRRLWDFIKFESGNL 578 +KL K++ + N+P V H +T + P+ V IP S ++ ++D F NL Sbjct: 871 FKLSKLRSI-----NIPNTVVHIYKTAFFGVPMTDVVIPDS----VQYIYD-KAFAESNL 920 Query: 579 CMITGGRNLGRVGTIV 626 IT GRNL ++G+++ Sbjct: 921 TNITLGRNLVKMGSLI 936 >UniRef50_O28859 Cluster: Surface layer protein B; n=1; Archaeoglobus fulgidus|Rep: Surface layer protein B - Archaeoglobus fulgidus Length = 2425 Score = 33.9 bits (74), Expect = 3.8 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 14/95 (14%) Frame = +3 Query: 210 PETNPENCETTPHKGD-GKVRT--DPTYPA-----GFMDVVSIEKTNELFRLIYDVKGRF 365 PETNP N H+G+ +V+ TYP+ F + +EK E +V+G++ Sbjct: 2322 PETNPTNLREGCHEGNFAEVQNVWVETYPSVTDKNPFWGCIILEKVGE--DRWEEVRGQY 2379 Query: 366 TIHRITPE------EAKYKLCKVKRVATGPKNVPY 452 + R TP + Y+ C++ R TG ++V Y Sbjct: 2380 NVKRSTPSSTSYTWDCGYRECQMTRSYTGSRDVTY 2414 >UniRef50_A3ZWH6 Cluster: Putative uncharacterized protein; n=1; Blastopirellula marina DSM 3645|Rep: Putative uncharacterized protein - Blastopirellula marina DSM 3645 Length = 1365 Score = 33.1 bits (72), Expect = 6.6 Identities = 18/61 (29%), Positives = 33/61 (54%) Frame = +3 Query: 480 RYPDPLIKVKIPSS*TSQLRRLWDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDI 659 R +PL ++ + + T++L RLW ++F SG+ I G L ++ +++ P FD Sbjct: 871 REDEPLRRLLLTETETARLNRLWSELRFVSGDALTIVGA--LEQLLEYATQDGRPSDFDP 928 Query: 660 V 662 V Sbjct: 929 V 929 >UniRef50_Q7U147 Cluster: PROBABLE OXIDASE; n=7; Mycobacterium tuberculosis complex|Rep: PROBABLE OXIDASE - Mycobacterium bovis Length = 504 Score = 32.7 bits (71), Expect = 8.7 Identities = 19/49 (38%), Positives = 25/49 (51%) Frame = -3 Query: 173 PGASTRATCGDRLTVSVHTHXQVCPTSMLWERLSASNAS*GLAPCWTSI 27 PG RAT GD + VSV T+ PTS+ W ++ N G P +I Sbjct: 93 PGPLIRATVGDEIVVSV-TNRLGDPTSVHWHGIALRNDMDGTEPATANI 140 Database: uniref50 Posted date: Oct 5, 2007 11:19 AM Number of letters in database: 575,637,011 Number of sequences in database: 1,657,284 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 768,422,381 Number of Sequences: 1657284 Number of extensions: 16621543 Number of successful extensions: 44218 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 42266 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 44159 length of database: 575,637,011 effective HSP length: 98 effective length of database: 413,223,179 effective search space used: 54132236449 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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