Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20589
         (691 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     24   1.0  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   2.4  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   2.4  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   2.4  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   2.4  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    23   3.1  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   3.1  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    23   3.1  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    21   7.2  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    21   7.2  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    21   7.2  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    21   7.2  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    21   7.2  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    21   7.2  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    21   7.2  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    21   7.2  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      21   9.5  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   9.5  

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -3

Query: 179 KSPGASTRATCGDRLTVSVHTHXQVCPTSMLW 84
           K PG S     GD + + V  H     T++ W
Sbjct: 104 KMPGPSVEVCLGDEVIIDVVNHLSSDSTTIHW 135


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 589 VIIHKFPDSNLMKSHNLRSCDV*LDGILTLISGS 488
           +I +  PD +++K   L +C   + G+L L+S S
Sbjct: 184 LIFYILPDLDVVKGAMLTNCICFVPGVLGLLSRS 217


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 589 VIIHKFPDSNLMKSHNLRSCDV*LDGILTLISGS 488
           +I +  PD +++K   L +C   + G+L L+S S
Sbjct: 184 LIFYILPDLDVVKGAMLTNCICFVPGVLGLLSRS 217


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 589 VIIHKFPDSNLMKSHNLRSCDV*LDGILTLISGS 488
           +I +  PD +++K   L +C   + G+L L+S S
Sbjct: 184 LIFYILPDLDVVKGAMLTNCICFVPGVLGLLSRS 217


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 589 VIIHKFPDSNLMKSHNLRSCDV*LDGILTLISGS 488
           +I +  PD +++K   L +C   + G+L L+S S
Sbjct: 184 LIFYILPDLDVVKGAMLTNCICFVPGVLGLLSRS 217


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +1

Query: 175 DFPEESSEVCFDRKRILKIVKQRLIK 252
           D P   S     + +ILK++++ L+K
Sbjct: 382 DLPLNISREMLQQNKILKVIRKNLVK 407


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = -3

Query: 173 PGASTRATCGDRLTVSVHTHXQVCPTSMLW 84
           PG S +   GD++ + V  H +    ++ W
Sbjct: 172 PGPSIQVCEGDKVVIDVENHIEGNEVTLHW 201



 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 41  MARGPKKHLKRLNAPKAWMLDKLG 112
           + R P +++K++N   A  LD+ G
Sbjct: 609 IGRSPDQNVKKINLKHALDLDRRG 632


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = -3

Query: 173 PGASTRATCGDRLTVSVHTHXQVCPTSMLW 84
           PG S +   GD++ + V  H +    ++ W
Sbjct: 172 PGPSIQVCEGDKVVIDVENHIEGNEVTLHW 201



 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 41  MARGPKKHLKRLNAPKAWMLDKLG 112
           + R P +++K++N   A  LD+ G
Sbjct: 609 IGRSPDQNVKKINLKHALDLDRQG 632


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/40 (25%), Positives = 17/40 (42%)
 Frame = +3

Query: 372 HRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 491
           H + P    Y   + +R+A+     P   TH   + +Y D
Sbjct: 64  HGLQPTMGDYTQLQPQRLASTHLQSPNTQTHPSASCKYAD 103


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/40 (25%), Positives = 17/40 (42%)
 Frame = +3

Query: 372 HRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 491
           H + P    Y   + +R+A+     P   TH   + +Y D
Sbjct: 64  HGLQPTMGDYTQLQPQRLASTHLQSPNTQTHPSASCKYAD 103


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/40 (25%), Positives = 17/40 (42%)
 Frame = +3

Query: 372 HRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 491
           H + P    Y   + +R+A+     P   TH   + +Y D
Sbjct: 64  HGLQPTMGDYTQLQPQRLASTHLQSPNTQTHPSASCKYAD 103


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/40 (25%), Positives = 17/40 (42%)
 Frame = +3

Query: 372 HRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 491
           H + P    Y   + +R+A+     P   TH   + +Y D
Sbjct: 64  HGLQPTMGDYTQLQPQRLASTHLQSPNTQTHPSASCKYAD 103


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/40 (25%), Positives = 17/40 (42%)
 Frame = +3

Query: 372 HRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 491
           H + P    Y   + +R+A+     P   TH   + +Y D
Sbjct: 64  HGLQPTMGDYTQLQPQRLASTHLQSPNTQTHPSASCKYAD 103


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/40 (25%), Positives = 17/40 (42%)
 Frame = +3

Query: 372 HRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 491
           H + P    Y   + +R+A+     P   TH   + +Y D
Sbjct: 20  HGLQPTMGDYTQLQPQRLASTHLQSPNTQTHPSASCKYAD 59


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/40 (25%), Positives = 17/40 (42%)
 Frame = +3

Query: 372 HRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 491
           H + P    Y   + +R+A+     P   TH   + +Y D
Sbjct: 64  HGLQPTMGDYTQLQPQRLASTHLQSPNTQTHPSASCKYAD 103


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/40 (25%), Positives = 17/40 (42%)
 Frame = +3

Query: 372 HRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 491
           H + P    Y   + +R+A+     P   TH   + +Y D
Sbjct: 64  HGLQPTMGDYTQLQPQRLASTHLQSPNTQTHPSASCKYAD 103


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -1

Query: 685 CPVESLMCTMSKEPGCLSRDTMVPTRPKLR 596
           C V+S     +K  GC S ++ V T   LR
Sbjct: 95  CSVKSESSQAAKYGGCFSGESTVLTSTGLR 124


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +1

Query: 388 RRLSTSCVKSSVWRPDLRMFR 450
           R+++  C+KS  WR  L + +
Sbjct: 525 RKVTFQCLKSIAWRAFLAVLK 545


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,491
Number of Sequences: 336
Number of extensions: 3841
Number of successful extensions: 22
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18114270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)