Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20589
(691 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 213 2e-56
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 212 4e-56
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 212 5e-56
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 27 3.4
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 3.4
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 25 7.8
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 213 bits (520), Expect = 2e-56
Identities = 96/143 (67%), Positives = 114/143 (79%)
Frame = +3
Query: 249 KGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 428
K DGKVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV
Sbjct: 71 KVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQ 130
Query: 429 TGPKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TSQLRRLWDFIKFESGNLCMITGGRNLG 608
G K VP+LVTHDGRTIRYPDPLIKV + ++ FIKF++ M+TGGRN+G
Sbjct: 131 LGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMG 190
Query: 609 RVGTIVSRERHPGSFDIVHIKDS 677
RVGTIV RE H GSF+I+H+KD+
Sbjct: 191 RVGTIVHREHHLGSFEIIHVKDA 213
Score = 107 bits (256), Expect = 2e-24
Identities = 45/60 (75%), Positives = 50/60 (83%)
Frame = +2
Query: 41 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 220
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 212 bits (518), Expect = 4e-56
Identities = 95/141 (67%), Positives = 113/141 (80%)
Frame = +3
Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 434
DGKVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G
Sbjct: 73 DGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLG 132
Query: 435 PKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TSQLRRLWDFIKFESGNLCMITGGRNLGRV 614
K VP+LVTHDGRTIRYPDPLIKV + ++ FIKF++ M+TGGRN+GRV
Sbjct: 133 AKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRV 192
Query: 615 GTIVSRERHPGSFDIVHIKDS 677
GTIV RE H GSF+I+H+KD+
Sbjct: 193 GTIVHREHHLGSFEIIHVKDA 213
Score = 107 bits (256), Expect = 2e-24
Identities = 45/60 (75%), Positives = 50/60 (83%)
Frame = +2
Query: 41 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 220
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 212 bits (517), Expect = 5e-56
Identities = 95/143 (66%), Positives = 114/143 (79%)
Frame = +3
Query: 249 KGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 428
K DGKVRTD T+P GFMDV+S++KT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV
Sbjct: 71 KVDGKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQ 130
Query: 429 TGPKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TSQLRRLWDFIKFESGNLCMITGGRNLG 608
G K VP+LVTHDGRTIRYPDPLIKV + ++ FIKF++ M+TGGRN+G
Sbjct: 131 LGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMG 190
Query: 609 RVGTIVSRERHPGSFDIVHIKDS 677
RVGTIV RE H GSF+I+H+KD+
Sbjct: 191 RVGTIVHREHHLGSFEIIHVKDA 213
Score = 107 bits (256), Expect = 2e-24
Identities = 45/60 (75%), Positives = 50/60 (83%)
Frame = +2
Query: 41 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 220
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 558 KFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIV 662
KFE LC + G L R+G + E GS D+V
Sbjct: 318 KFELRRLCRVVGATPLARMGVPMPEEM--GSVDVV 350
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +3
Query: 300 DVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL-VTHDGRT 476
+V S+EK N++F + Y+V + + + K+ ++ ++ KNVP + V H
Sbjct: 1718 NVSSLEKCNQIFSIFYEVFFQHPSTNVYANDEGIKIGALQIISFFLKNVPEITVQHQTEM 1777
Query: 477 IR 482
++
Sbjct: 1778 LK 1779
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -3
Query: 395 SLLRGDTVDCESALNIID*TKQ 330
S RGDT D +ALNI + TK+
Sbjct: 898 STRRGDTDDATTALNIFEETKR 919
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,095,975
Number of Sequences: 5004
Number of extensions: 66052
Number of successful extensions: 164
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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