Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20589
(691 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 198 4e-51
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 193 1e-49
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 192 2e-49
09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078 31 0.65
10_07_0015 + 11813465-11813479,11814342-11814422,11814842-118149... 29 3.5
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 29 3.5
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 6.1
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 198 bits (482), Expect = 4e-51
Identities = 89/144 (61%), Positives = 109/144 (75%)
Frame = +3
Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 434
DGKVRTD TYPAGFMDVVSI KT E FRL+YD KGRF +H I E+AK+KLCKV+ V G
Sbjct: 89 DGKVRTDKTYPAGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAKFKLCKVRSVQFG 148
Query: 435 PKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TSQLRRLWDFIKFESGNLCMITGGRNLGRV 614
K +P+L T+DGRTIRYPDPLIK + ++ DFIKF+ GN+ M+TGGRN GRV
Sbjct: 149 QKGIPFLNTNDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNIVMVTGGRNTGRV 208
Query: 615 GTIVSRERHPGSFDIVHIKDSTGH 686
G I SRE+H GSF+ +H++D+ GH
Sbjct: 209 GVIKSREKHKGSFETIHVEDALGH 232
Score = 105 bits (253), Expect = 3e-23
Identities = 46/59 (77%), Positives = 51/59 (86%)
Frame = +2
Query: 44 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 220
ARG KKHLKRLNAP WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT E
Sbjct: 18 ARGLKKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYRE 76
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 193 bits (470), Expect = 1e-49
Identities = 85/144 (59%), Positives = 108/144 (75%)
Frame = +3
Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 434
DGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK+KLCKV+ V G
Sbjct: 73 DGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFG 132
Query: 435 PKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TSQLRRLWDFIKFESGNLCMITGGRNLGRV 614
K +PYL T+DGRTIRYPDPLIK + ++ DFIKF+ GN+ M+TGGRN GRV
Sbjct: 133 QKGIPYLNTYDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRV 192
Query: 615 GTIVSRERHPGSFDIVHIKDSTGH 686
G I +RE+H GSF+ +H++D+ GH
Sbjct: 193 GVIKNREKHKGSFETIHVEDALGH 216
Score = 108 bits (260), Expect = 4e-24
Identities = 47/60 (78%), Positives = 53/60 (88%)
Frame = +2
Query: 41 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 220
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 192 bits (468), Expect = 2e-49
Identities = 84/144 (58%), Positives = 108/144 (75%)
Frame = +3
Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 434
DGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK+KLCKV+ V G
Sbjct: 73 DGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFG 132
Query: 435 PKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TSQLRRLWDFIKFESGNLCMITGGRNLGRV 614
K +PYL T+DGRTIRYPDP+IK + ++ DFIKF+ GN+ M+TGGRN GRV
Sbjct: 133 QKGIPYLNTYDGRTIRYPDPIIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRV 192
Query: 615 GTIVSRERHPGSFDIVHIKDSTGH 686
G I +RE+H GSF+ +H++D+ GH
Sbjct: 193 GVIKNREKHKGSFETIHVEDALGH 216
Score = 108 bits (260), Expect = 4e-24
Identities = 47/60 (78%), Positives = 53/60 (88%)
Frame = +2
Query: 41 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 220
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
>09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078
Length = 574
Score = 31.5 bits (68), Expect = 0.65
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -3
Query: 185 SGKSPGASTRATCGDRLTVSVHTHXQVCPTSMLW 84
+G+SPG + RA GD L V+VH T++ W
Sbjct: 50 NGESPGPTIRAAQGDTLVVTVHNMLDTENTAIHW 83
>10_07_0015 +
11813465-11813479,11814342-11814422,11814842-11814951,
11815553-11815608,11816086-11816180,11817021-11817126,
11817261-11817577,11817666-11817848,11817976-11818173,
11819029-11819346,11819721-11819813
Length = 523
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 157 RVLAPGDFPEESSEVCFDRKRILKIVK 237
+VL G P+ESSEV D ILK+++
Sbjct: 468 KVLDEGSSPQESSEVTCDENAILKVME 494
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -2
Query: 198 FRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAFKR 70
F L ++ + L G G+G Y PPSLSN + AFKR
Sbjct: 35 FNVALNRLPASAGASPLLGHGHGVGVYYPPSLSNA-LVAAFKR 76
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 333 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 437
+ LIYD++G + + P++A L ++ V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,542,212
Number of Sequences: 37544
Number of extensions: 488857
Number of successful extensions: 1325
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1324
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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