Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20589
         (691 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)             211   3e-55
SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_46368| Best HMM Match : DUF156 (HMM E-Value=6.5)                    28   6.2  

>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score =  211 bits (516), Expect = 3e-55
 Identities = 96/146 (65%), Positives = 116/146 (79%)
 Frame = +3

Query: 249 KGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 428
           K DGKVRTD TYPAGFMDVV+I+KT E FRL+YDVKGRF +HRIT EEAKYKL +V+RV 
Sbjct: 495 KIDGKVRTDTTYPAGFMDVVTIDKTGENFRLLYDVKGRFAVHRITAEEAKYKLGRVRRVD 554

Query: 429 TGPKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TSQLRRLWDFIKFESGNLCMITGGRNLG 608
            G K VPY+VTHD RTIRYPDP IKV        +  ++ D+IKF++GN+ M+ GGRN+G
Sbjct: 555 VGAKGVPYIVTHDARTIRYPDPNIKVNDTVVIDIKTGKVIDYIKFDTGNMAMVVGGRNMG 614

Query: 609 RVGTIVSRERHPGSFDIVHIKDSTGH 686
           RVG +  RE+H GSFDIVH+KD+TGH
Sbjct: 615 RVGMVTHREKHAGSFDIVHVKDATGH 640



 Score =  122 bits (294), Expect = 3e-28
 Identities = 54/64 (84%), Positives = 58/64 (90%)
 Frame = +2

Query: 41  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 220
           MARGPKKH+KRLNAPK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYAL G E
Sbjct: 425 MARGPKKHMKRLNAPKHWMLDKLSGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALNGEE 484

Query: 221 S*KL 232
             K+
Sbjct: 485 VKKI 488


>SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1776

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +3

Query: 234 ETTPHKGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGR 362
           E+T  +G G +   P+YP+  ++  ++  +N+LF    +   R
Sbjct: 609 ESTLVRGRGDILISPSYPSALLETTTLITSNQLFNTFIESSTR 651


>SB_46368| Best HMM Match : DUF156 (HMM E-Value=6.5)
          Length = 203

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -2

Query: 183 RKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAF-KRFKCFLGPRAMLDK 31
           RK +R     N++G ++GLG+  PP  + I     F K  K F  PR    K
Sbjct: 60  RKRSRSLPRTNVFGTLNGLGSPPPPRDNRIDEYAEFTKSQKSFTFPRRSKQK 111


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,340,767
Number of Sequences: 59808
Number of extensions: 535927
Number of successful extensions: 1237
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1233
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)