Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20589
         (691 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011369-1|AAR96161.1|  261|Drosophila melanogaster RE57333p pro...   237   1e-62
AE014296-2240|AAF49846.1|  261|Drosophila melanogaster CG11276-P...   237   1e-62
AE014296-2239|AAF49847.1|  261|Drosophila melanogaster CG11276-P...   237   1e-62
D16257-1|BAA03786.1|  261|Drosophila melanogaster ribosomal prot...   233   1e-61
AF114160-1|AAD26161.2| 2077|Drosophila melanogaster adherin Nipp...    29   7.9  
AE013599-26|EAA46003.3| 2077|Drosophila melanogaster CG17704-PF,...    29   7.9  
AE013599-25|EAA46004.3| 2077|Drosophila melanogaster CG17704-PE,...    29   7.9  

>BT011369-1|AAR96161.1|  261|Drosophila melanogaster RE57333p
           protein.
          Length = 261

 Score =  237 bits (579), Expect = 1e-62
 Identities = 107/146 (73%), Positives = 121/146 (82%)
 Frame = +3

Query: 249 KGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 428
           K DGKVRTDPTYPAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+  
Sbjct: 71  KVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQ 130

Query: 429 TGPKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TSQLRRLWDFIKFESGNLCMITGGRNLG 608
            G K VP+LVTHDGRTIRYPDPLI             ++ D+IKF+SGNLCMITGGRNLG
Sbjct: 131 LGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLG 190

Query: 609 RVGTIVSRERHPGSFDIVHIKDSTGH 686
           RVGT+V+RERHPGSFDIVHIKDS GH
Sbjct: 191 RVGTVVNRERHPGSFDIVHIKDSQGH 216



 Score =  119 bits (286), Expect = 4e-27
 Identities = 55/64 (85%), Positives = 58/64 (90%)
 Frame = +2

Query: 41  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 220
           MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G E
Sbjct: 1   MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAE 60

Query: 221 S*KL 232
             K+
Sbjct: 61  VTKI 64


>AE014296-2240|AAF49846.1|  261|Drosophila melanogaster CG11276-PB,
           isoform B protein.
          Length = 261

 Score =  237 bits (579), Expect = 1e-62
 Identities = 107/146 (73%), Positives = 121/146 (82%)
 Frame = +3

Query: 249 KGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 428
           K DGKVRTDPTYPAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+  
Sbjct: 71  KVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQ 130

Query: 429 TGPKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TSQLRRLWDFIKFESGNLCMITGGRNLG 608
            G K VP+LVTHDGRTIRYPDPLI             ++ D+IKF+SGNLCMITGGRNLG
Sbjct: 131 LGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLG 190

Query: 609 RVGTIVSRERHPGSFDIVHIKDSTGH 686
           RVGT+V+RERHPGSFDIVHIKDS GH
Sbjct: 191 RVGTVVNRERHPGSFDIVHIKDSQGH 216



 Score =  119 bits (286), Expect = 4e-27
 Identities = 55/64 (85%), Positives = 58/64 (90%)
 Frame = +2

Query: 41  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 220
           MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G E
Sbjct: 1   MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAE 60

Query: 221 S*KL 232
             K+
Sbjct: 61  VTKI 64


>AE014296-2239|AAF49847.1|  261|Drosophila melanogaster CG11276-PA,
           isoform A protein.
          Length = 261

 Score =  237 bits (579), Expect = 1e-62
 Identities = 107/146 (73%), Positives = 121/146 (82%)
 Frame = +3

Query: 249 KGDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 428
           K DGKVRTDPTYPAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+  
Sbjct: 71  KVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQ 130

Query: 429 TGPKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TSQLRRLWDFIKFESGNLCMITGGRNLG 608
            G K VP+LVTHDGRTIRYPDPLI             ++ D+IKF+SGNLCMITGGRNLG
Sbjct: 131 LGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLG 190

Query: 609 RVGTIVSRERHPGSFDIVHIKDSTGH 686
           RVGT+V+RERHPGSFDIVHIKDS GH
Sbjct: 191 RVGTVVNRERHPGSFDIVHIKDSQGH 216



 Score =  119 bits (286), Expect = 4e-27
 Identities = 55/64 (85%), Positives = 58/64 (90%)
 Frame = +2

Query: 41  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 220
           MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G E
Sbjct: 1   MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAE 60

Query: 221 S*KL 232
             K+
Sbjct: 61  VTKI 64


>D16257-1|BAA03786.1|  261|Drosophila melanogaster ribosomal protein
           S4 protein.
          Length = 261

 Score =  233 bits (571), Expect = 1e-61
 Identities = 105/143 (73%), Positives = 119/143 (83%)
 Frame = +3

Query: 258 GKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 437
           GKVRTDPTYPAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+   G 
Sbjct: 74  GKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGA 133

Query: 438 KNVPYLVTHDGRTIRYPDPLIKVKIPSS*TSQLRRLWDFIKFESGNLCMITGGRNLGRVG 617
           K VP+LVTHDGRTIRYPDPLI             ++ D+IKF+SGNLCMITGGRNLGRVG
Sbjct: 134 KGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVG 193

Query: 618 TIVSRERHPGSFDIVHIKDSTGH 686
           T+V+RERHPGSFDIVHIKDS GH
Sbjct: 194 TVVNRERHPGSFDIVHIKDSQGH 216



 Score =  117 bits (281), Expect = 2e-26
 Identities = 54/64 (84%), Positives = 57/64 (89%)
 Frame = +2

Query: 41  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 220
           MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+ FLRNRLKYAL G E
Sbjct: 1   MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLTFLRNRLKYALNGAE 60

Query: 221 S*KL 232
             K+
Sbjct: 61  VTKI 64


>AF114160-1|AAD26161.2| 2077|Drosophila melanogaster adherin Nipped-B
            protein.
          Length = 2077

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = -3

Query: 476  GAAIMRY-QVRNILRSGRH-TLDFTQLVLSLLRGDTVDCESALNIID*TKQFISL 318
            G  ++RY   + I +S R  +LD+  +V + LR DTV+    +NIID   Q I L
Sbjct: 888  GTMLVRYVSDKGIEQSIRLVSLDYLGIVAARLRKDTVESRCRVNIIDSMIQSIKL 942


>AE013599-26|EAA46003.3| 2077|Drosophila melanogaster CG17704-PF,
            isoform F protein.
          Length = 2077

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = -3

Query: 476  GAAIMRY-QVRNILRSGRH-TLDFTQLVLSLLRGDTVDCESALNIID*TKQFISL 318
            G  ++RY   + I +S R  +LD+  +V + LR DTV+    +NIID   Q I L
Sbjct: 888  GTMLVRYVSDKGIEQSIRLVSLDYLGIVAARLRKDTVESRCRVNIIDSMIQSIKL 942


>AE013599-25|EAA46004.3| 2077|Drosophila melanogaster CG17704-PE,
            isoform E protein.
          Length = 2077

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = -3

Query: 476  GAAIMRY-QVRNILRSGRH-TLDFTQLVLSLLRGDTVDCESALNIID*TKQFISL 318
            G  ++RY   + I +S R  +LD+  +V + LR DTV+    +NIID   Q I L
Sbjct: 888  GTMLVRYVSDKGIEQSIRLVSLDYLGIVAARLRKDTVESRCRVNIIDSMIQSIKL 942


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,411,744
Number of Sequences: 53049
Number of extensions: 809856
Number of successful extensions: 2107
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2098
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3005453946
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)