Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20589
         (691 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) riboso...   202   1e-52
At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)             202   2e-52
At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contai...   202   2e-52
At4g10710.1 68417.m01751 transcriptional regulator-related simil...    31   0.72 

>At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) ribosomal
           protein S4, Arabidopsis thaliana, PIR:T48480
          Length = 262

 Score =  202 bits (494), Expect = 1e-52
 Identities = 92/144 (63%), Positives = 111/144 (77%)
 Frame = +3

Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 434
           DGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I  EEAK+KLCKV+ +  G
Sbjct: 73  DGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFG 132

Query: 435 PKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TSQLRRLWDFIKFESGNLCMITGGRNLGRV 614
            K +PYL T+DGRTIRYPDPLIK         +  ++ +FIKF+ GN+ M+TGGRN GRV
Sbjct: 133 QKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNVVMVTGGRNRGRV 192

Query: 615 GTIVSRERHPGSFDIVHIKDSTGH 686
           G I +RE+H GSF+ +HI+DSTGH
Sbjct: 193 GVIKNREKHKGSFETIHIQDSTGH 216



 Score =  109 bits (261), Expect = 2e-24
 Identities = 48/60 (80%), Positives = 53/60 (88%)
 Frame = +2

Query: 41  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 220
           MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT  E
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60


>At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)
          Length = 262

 Score =  202 bits (492), Expect = 2e-52
 Identities = 92/144 (63%), Positives = 111/144 (77%)
 Frame = +3

Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 434
           DGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I  EEAK+KLCKV+ +  G
Sbjct: 73  DGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFG 132

Query: 435 PKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TSQLRRLWDFIKFESGNLCMITGGRNLGRV 614
            K +PYL T+DGRTIRYPDPLIK         +  ++ +FIKF+ GN+ M+TGGRN GRV
Sbjct: 133 QKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRV 192

Query: 615 GTIVSRERHPGSFDIVHIKDSTGH 686
           G I +RE+H GSF+ +HI+DSTGH
Sbjct: 193 GVIKNREKHKGSFETIHIQDSTGH 216



 Score =  109 bits (261), Expect = 2e-24
 Identities = 48/60 (80%), Positives = 53/60 (88%)
 Frame = +2

Query: 41  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 220
           MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT  E
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60


>At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contains
           ribosomal protein S4 signature from residues 8 to 22
          Length = 261

 Score =  202 bits (492), Expect = 2e-52
 Identities = 92/144 (63%), Positives = 111/144 (77%)
 Frame = +3

Query: 255 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 434
           DGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I  EEAK+KLCKV+ +  G
Sbjct: 73  DGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFG 132

Query: 435 PKNVPYLVTHDGRTIRYPDPLIKVKIPSS*TSQLRRLWDFIKFESGNLCMITGGRNLGRV 614
            K +PYL T+DGRTIRYPDPLIK         +  ++ +FIKF+ GN+ M+TGGRN GRV
Sbjct: 133 QKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRV 192

Query: 615 GTIVSRERHPGSFDIVHIKDSTGH 686
           G I +RE+H GSF+ +HI+DSTGH
Sbjct: 193 GVIKNREKHKGSFETIHIQDSTGH 216



 Score =  109 bits (261), Expect = 2e-24
 Identities = 48/60 (80%), Positives = 53/60 (88%)
 Frame = +2

Query: 41  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 220
           MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT  E
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60


>At4g10710.1 68417.m01751 transcriptional regulator-related similar
           to chromatin-specific transcription elongation factor
           FACT 140 kDa subunit (GI:5499741) [Homo sapiens]
          Length = 1074

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 165 KHSRNLWGPVDGLGAYTPPSLSNIHAL 85
           KHS +LWG  D L   TPP+  ++  L
Sbjct: 44  KHSADLWGSADALAIATPPASDDLRYL 70


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,756,102
Number of Sequences: 28952
Number of extensions: 371802
Number of successful extensions: 974
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)