Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20588
         (699 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    25   0.79 
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    24   1.0  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    24   1.0  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    24   1.0  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    24   1.0  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    22   4.2  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   5.5  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    22   5.5  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    22   5.5  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   9.7  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -1

Query: 666 NTFHETAKLSFENRCSTQIQKLGSFLFRYHLGELR 562
           +TF  T KL + +    +I ++ + LFR+ LG LR
Sbjct: 290 DTFRNTKKLQWLDTSHNRISEIPNDLFRF-LGNLR 323


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 581 YLKRKDPSFWIWVLHLFSKDNFAVS 655
           YL+  DP ++ +  H+F  D F +S
Sbjct: 600 YLRVVDPDYYEFETHIFFDDAFEIS 624


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 581 YLKRKDPSFWIWVLHLFSKDNFAVS 655
           YL+  DP ++ +  H+F  D F +S
Sbjct: 600 YLRVVDPDYYEFETHIFFDDAFEIS 624


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 581 YLKRKDPSFWIWVLHLFSKDNFAVS 655
           YL+  DP ++ +  H+F  D F +S
Sbjct: 600 YLRVVDPDYYEFETHIFFDDAFEIS 624


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 581 YLKRKDPSFWIWVLHLFSKDNFAVS 655
           YL+  DP ++ +  H+F  D F +S
Sbjct: 600 YLRVVDPDYYEFETHIFFDDAFEIS 624


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 108 PCCCMILHDSVSLFSSLPVHRTEHIG 31
           P  C+I H  +S  S+L +H   H G
Sbjct: 134 PNQCVICHRVLSCKSALQMHYRTHTG 159


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 12/41 (29%), Positives = 16/41 (39%)
 Frame = -1

Query: 150 GSQRPNQGELPEPPPCCCMILHDSVSLFSSLPVHRTEHIGS 28
           GS     G   +PP     + H   SL   +    T H+GS
Sbjct: 115 GSDLYFPGATSQPPTDNSHVHHHQTSLLGKVEGAATHHLGS 155


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/36 (22%), Positives = 18/36 (50%)
 Frame = -2

Query: 248 DSSKPPHHVQLVFLLIHGVVMLWKWEAVGNLQTVLN 141
           + +  P H + +F++ H    LW  + +  L ++ N
Sbjct: 42  EQNNQPVHDEHLFIVTHQAYELWFKQIIYELDSIRN 77


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/36 (22%), Positives = 18/36 (50%)
 Frame = -2

Query: 248 DSSKPPHHVQLVFLLIHGVVMLWKWEAVGNLQTVLN 141
           + +  P H + +F++ H    LW  + +  L ++ N
Sbjct: 42  EQNNQPVHDEHLFIVTHQAYELWFKQIIYELDSIRN 77


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -3

Query: 400 ESSG*FLCIVNHN 362
           E SG +LC+VN++
Sbjct: 300 EDSGKYLCVVNNS 312


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,255
Number of Sequences: 336
Number of extensions: 4045
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)