Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20588
(699 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo... 65 1e-11
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr... 29 0.64
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch... 28 1.5
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 28 1.5
SPCC1795.02c ||SPCC895.01|CaCA proton/calcium exchanger|Schizosa... 28 1.5
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 27 2.0
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 27 3.4
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 26 4.5
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 6.0
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 25 7.9
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 7.9
>SPAC821.05 |||translation initiation factor
eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
Length = 357
Score = 64.9 bits (151), Expect = 1e-11
Identities = 31/83 (37%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Frame = +2
Query: 263 HVGWYQSADVGNFLSLSL-LESQYHYQTSIEESVVVIYDTKKSARGFLTLKAYRLTPQAI 439
HVGWY A V +FLS +E+QY YQ + S+ +YD +S+ G L ++AY+LTP+ +
Sbjct: 104 HVGWYLGAYVSSFLSSPFFVETQYAYQKANPNSIAFLYDLSQSSNGTLYMRAYQLTPEFM 163
Query: 440 AMYKEGDYTPEALRNLKIGYENL 508
A ++E +T +L + + N+
Sbjct: 164 AAHEEKTWTASSLNSHNLTPSNV 186
Score = 36.7 bits (81), Expect = 0.003
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Frame = +3
Query: 12 PENEAT-IQYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVENRLEITNCFPFP 182
PE E+ I+ V+ + L VM I+KHC +S NM G L+G+ ++ L++++ F P
Sbjct: 10 PELESPPIERVELESLLVMNIIKHC-RDSFPNMGTI-GQLVGIDIDGVLQVSSSFESP 65
>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 591
Score = 29.1 bits (62), Expect = 0.64
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = +3
Query: 105 MEVAQGALLGLVVENRLEITNCFPFPKHDDTMDEEEYQLDMMRRLRRVNVIIFM 266
M+ + L GLV + +T + P H + + +++LD R RR+N+I ++
Sbjct: 355 MDTTEELLSGLVKD----LTGSYKVPYHPEGPEGPKWELDFSRPWRRINMIEYL 404
>SPAP8A3.14c |||mitochondrial inner membrane protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 677
Score = 27.9 bits (59), Expect = 1.5
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = -1
Query: 696 ELDRFLIQFINTFHETAKLSFENRCSTQIQK--LGSFLFRYHL-GELRDHYVS*W-RVPD 529
E++R L+ F+ F T K ++ C T + L F + + L L+D W RV +
Sbjct: 285 EIERKLLSFVMLFENTDKCLIDSECLTSKKSFTLNDFTYDFRLPWYLKDDSWKRWCRVKE 344
Query: 528 NNWH 517
+W+
Sbjct: 345 YSWN 348
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 27.9 bits (59), Expect = 1.5
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -2
Query: 227 HVQLVFLLIHGVVMLWKWEAVGNLQTVLND 138
+++ VFL IH ++ W+WE V + ++ D
Sbjct: 969 YLRTVFLRIHFLISEWRWEDVAQILFLIFD 998
>SPCC1795.02c ||SPCC895.01|CaCA proton/calcium
exchanger|Schizosaccharomyces pombe|chr 3|||Manual
Length = 412
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Frame = +3
Query: 138 VVENRLEITNCFPFPKHD----DTMDEEEYQLDMMRRLRRVNVI 257
+ +NRLE N F FP D + EY M R+L +NV+
Sbjct: 7 IAKNRLEAMNSFNFPAQDRHERAPLLGSEYDHSMARQLSLLNVV 50
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -1
Query: 141 RPNQGELPEPPPCCCMILHDSVSLFSSLPVHRTEHIGSS 25
R N +LP PP ++ +++ LF+S+ H+ + S
Sbjct: 768 RSNSAKLPYVPPSLTSLIDNAIQLFASMFCHQPPKVMES 806
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +2
Query: 347 IEESVVVIYDTKKSARGFLTLKAYRLTPQAIAMYKEGDYTPEALRNLKIGY 499
+ + +VV YD K + F L+A TP+ E TPE L+++ + +
Sbjct: 737 VRKDIVVQYDMKPDSPRFQQLRAQITTPEI-----EKQSTPEILKDVDVDF 782
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 26.2 bits (55), Expect = 4.5
Identities = 21/66 (31%), Positives = 31/66 (46%)
Frame = -2
Query: 344 RSDSDIVTLITKGLENCLHLHSGTIQHENDNIDSSKPPHHVQLVFLLIHGVVMLWKWEAV 165
RSD D T+ T+G + CLH +G + + K P ++ L G L + AV
Sbjct: 95 RSDVD-PTITTRGGQTCLHYAAGKGRLSIVQLLCDKAPELIRKKDL--QGQTPLHRAAAV 151
Query: 164 GNLQTV 147
G +Q V
Sbjct: 152 GKIQVV 157
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -1
Query: 165 W*SPDGSQRPNQGELPEPPP 106
W + DGS NQ P PPP
Sbjct: 1868 WVNDDGSDLSNQAAPPPPPP 1887
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -2
Query: 287 LHSGTIQHENDNIDSSKP 234
+H+G IQH+N N S+ P
Sbjct: 234 IHAGPIQHQNSNAFSNYP 251
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = -2
Query: 464 CNRLPCT*Q*PEV---SNDRPSKSRILWLISL 378
CN + C Q + SN +P +R+LWL+S+
Sbjct: 2947 CNAVSCFLQASSLLSSSNSKPLLTRVLWLLSV 2978
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,069,320
Number of Sequences: 5004
Number of extensions: 66962
Number of successful extensions: 200
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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