Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20588
(699 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0650 - 18411588-18411645,18412020-18412172,18412340-184124... 75 5e-14
04_04_1468 + 33811471-33811657,33811888-33811980,33812899-338130... 32 0.50
06_01_0893 - 6834350-6834464,6835042-6835218,6835301-6835350,683... 31 0.88
03_01_0414 + 3183292-3183735,3184547-3184969,3185435-3185535,318... 30 1.5
07_01_0662 + 4972953-4973645,4973758-4974046,4974790-4974803,497... 29 2.7
07_01_0213 - 1573315-1573485,1573583-1573765,1573858-1574046,157... 29 4.7
02_03_0085 + 15063444-15063889,15064324-15065311 29 4.7
12_02_0228 + 15903452-15903812,15904153-15904202,15904615-159047... 28 6.2
05_02_0151 - 7115201-7115668,7115851-7116137,7117355-7117784 28 6.2
05_01_0240 - 1791138-1791470 28 8.2
02_05_0996 - 33380363-33380597,33380767-33380851,33381206-333815... 28 8.2
>04_03_0650 -
18411588-18411645,18412020-18412172,18412340-18412407,
18412499-18412600,18412695-18412766,18412843-18412891,
18412971-18413104,18413488-18413554,18414471-18414574,
18414677-18414793,18415538-18415647,18415763-18415772
Length = 347
Score = 74.9 bits (176), Expect = 5e-14
Identities = 41/84 (48%), Positives = 54/84 (64%), Gaps = 4/84 (4%)
Frame = +3
Query: 15 ENEATIQYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVENRLEITNCFPFPKHDD 194
E + ++ VQ +GLAV+KI+KHC E + + + G LLGL V + LE+TNCFPFP +D
Sbjct: 27 EAPSPLRVVQMEGLAVLKIIKHCEEFAPA---LVTGQLLGLDVGSVLEVTNCFPFPMRED 83
Query: 195 ----TMDEEEYQLDMMRRLRRVNV 254
D YQL+MMR LR VNV
Sbjct: 84 DEEADADGANYQLEMMRCLREVNV 107
Score = 67.7 bits (158), Expect = 8e-12
Identities = 30/81 (37%), Positives = 50/81 (61%)
Frame = +2
Query: 266 VGWYQSADVGNFLSLSLLESQYHYQTSIEESVVVIYDTKKSARGFLTLKAYRLTPQAIAM 445
VGWYQS +G+F ++ L+E+ +YQ +I V ++YD +S +G L LKA +LT + +
Sbjct: 112 VGWYQSCLLGSFQTVELIETFMNYQENIRRCVCIVYDPSRSNQGVLALKALKLTDSFMDL 171
Query: 446 YKEGDYTPEALRNLKIGYENL 508
Y+ T E LR K+ + ++
Sbjct: 172 YRNNGLTGEKLREKKLSWVDI 192
>04_04_1468 +
33811471-33811657,33811888-33811980,33812899-33813027,
33813089-33813166,33813377-33813435,33813522-33813644,
33814225-33814282,33814383-33814468,33814564-33814635
Length = 294
Score = 31.9 bits (69), Expect = 0.50
Identities = 17/66 (25%), Positives = 30/66 (45%)
Frame = +3
Query: 27 TIQYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVENRLEITNCFPFPKHDDTMDE 206
T++ V L ++ IV H + + + G LLG +++TN + P +D D
Sbjct: 13 TLEKVVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGSVDVTNSYAVPFEEDDKDP 72
Query: 207 EEYQLD 224
+ LD
Sbjct: 73 RIWFLD 78
>06_01_0893 -
6834350-6834464,6835042-6835218,6835301-6835350,
6836348-6836416,6836495-6836593,6836681-6836759,
6837604-6837704,6838645-6838713,6839548-6839588,
6839793-6841159,6841472-6841575,6841914-6842351,
6843040-6843567
Length = 1078
Score = 31.1 bits (67), Expect = 0.88
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 192 DTMDEEEYQLDMMRRLRRVNVIIFMLDGTRV 284
D +DE + +M+RLR NV++FM TRV
Sbjct: 841 DALDEFRTEFQIMKRLRHPNVVLFMGAVTRV 871
>03_01_0414 +
3183292-3183735,3184547-3184969,3185435-3185535,
3186178-3187439,3187625-3187665,3187777-3187845,
3187975-3188075,3188413-3188491,3188570-3188668,
3188757-3188825,3188918-3188967,3189211-3189387,
3189496-3189634
Length = 1017
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 186 HDDTMDEEEYQLDMMRRLRRVNVIIFMLDGTR 281
+ D +DE ++ +MRRLR N+++FM TR
Sbjct: 770 YGDALDEFRSEVRIMRRLRHPNIVLFMGAVTR 801
>07_01_0662 +
4972953-4973645,4973758-4974046,4974790-4974803,
4974848-4974856
Length = 334
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -1
Query: 156 PDGSQRPNQGELPEPPPCCCMILHDSVSLFSSLPVHRTEHIGSSLHF 16
P G P QG + PPP + +S F SLP+H+ + G ++H+
Sbjct: 207 PPGYIEPPQGYIEPPPPEPTLARIESTESF-SLPLHKVD--GRAIHY 250
>07_01_0213 -
1573315-1573485,1573583-1573765,1573858-1574046,
1574182-1574263,1574315-1574421,1575086-1575161,
1575457-1575637,1575711-1575828
Length = 368
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +2
Query: 266 VGWYQSADVGNFLSLSLLESQYH--YQTSIEESVVVIYDTKKSARGFLTLKAYR 421
VGWY+S + G + S +S +H ++ +++V D KSA G T+ A+R
Sbjct: 166 VGWYRS-NPGFYGRPSNHDSVFHKAFEQLNPRAILVAVDPVKSATGNFTMNAFR 218
>02_03_0085 + 15063444-15063889,15064324-15065311
Length = 477
Score = 28.7 bits (61), Expect = 4.7
Identities = 24/75 (32%), Positives = 33/75 (44%)
Frame = -1
Query: 237 ASSSCPTGIPPHPWCRHALEMGSSW*SPDGSQRPNQGELPEPPPCCCMILHDSVSLFSSL 58
+SS PT P H W R G P S G E C +I+ +V+L +L
Sbjct: 31 SSSRLPTTTPLHHWPRRRRSRGLP-PPPPPSPHSTAGPAGE---FCKIIIVPTVAL--AL 84
Query: 57 PVHRTEHIGSSLHFQ 13
P HR H G+++ Q
Sbjct: 85 PSHRIAHHGTAIEQQ 99
>12_02_0228 +
15903452-15903812,15904153-15904202,15904615-15904713,
15907146-15907415,15908045-15908125,15909033-15909599,
15909677-15910053,15910326-15911613
Length = 1030
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = +2
Query: 107 GGGSGSSPWFGR*EPSGDYQLLP 175
GGG GS WF R SG LLP
Sbjct: 47 GGGGGSGGWFSRLVASGASLLLP 69
>05_02_0151 - 7115201-7115668,7115851-7116137,7117355-7117784
Length = 394
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +3
Query: 162 TNCFPFPKHDDTMDEEEYQLDMMRRLRRVNVIIFMLDGTRVQM 290
TN PFP+H+ +E + ++++++ I +LD +V M
Sbjct: 177 TNLLPFPQHNRKPSIDEQFARFIEAIQKIHINIPILDAMQVPM 219
>05_01_0240 - 1791138-1791470
Length = 110
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 6/32 (18%)
Frame = +1
Query: 85 MKNHA-ATWRW-----LRELSLVWSLRTVWRL 162
M+ HA WRW LR L W R VWRL
Sbjct: 24 MQQHADGQWRWRPGLCLRRFRLRWLRRAVWRL 55
>02_05_0996 -
33380363-33380597,33380767-33380851,33381206-33381557,
33381690-33382340
Length = 440
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +1
Query: 85 MKNHAATWRWLRELSLVWSLRTVWRLPTASHFQSMTTPWMRRNTS 219
M N + TWR +++ V +WR+ S PW+ R S
Sbjct: 9 MSNVSYTWRSIQKGLTVLQNGMIWRVGNGSKINIWADPWIPRGWS 53
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,217,881
Number of Sequences: 37544
Number of extensions: 463357
Number of successful extensions: 1305
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1302
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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