Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20588
(699 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33661| Best HMM Match : No HMM Matches (HMM E-Value=.) 93 2e-19
SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_22901| Best HMM Match : PHD (HMM E-Value=5.3e-05) 30 2.1
SB_31995| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_11179| Best HMM Match : ERM (HMM E-Value=4) 29 3.6
SB_36259| Best HMM Match : PHD (HMM E-Value=5.3e-05) 28 6.3
SB_25021| Best HMM Match : TP2 (HMM E-Value=2.8) 28 6.3
SB_21083| Best HMM Match : PHD (HMM E-Value=5.3e-05) 28 6.3
SB_7292| Best HMM Match : RVT_1 (HMM E-Value=0) 28 6.3
SB_55616| Best HMM Match : Exo_endo_phos (HMM E-Value=0.032) 28 6.3
SB_43853| Best HMM Match : AAA_5 (HMM E-Value=0) 28 6.3
SB_39447| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_33045| Best HMM Match : RVT_1 (HMM E-Value=3.4e-18) 28 6.3
SB_26487| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_24847| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_10962| Best HMM Match : PHD (HMM E-Value=5.3e-05) 28 6.3
SB_9001| Best HMM Match : PHD (HMM E-Value=0.00096) 28 8.4
SB_6668| Best HMM Match : PHD (HMM E-Value=0.00096) 28 8.4
>SB_33661| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 425
Score = 93.1 bits (221), Expect = 2e-19
Identities = 44/79 (55%), Positives = 57/79 (72%), Gaps = 4/79 (5%)
Frame = +3
Query: 30 IQYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVENRLEITNCFPFPKH----DDT 197
I VQ DGL V+KI+KHC EE S ++ QG LLGL+ +NRLEITNCFPFP + D+
Sbjct: 15 IDIVQVDGLTVLKIIKHCEEEGSSG-DLVQGVLLGLIQDNRLEITNCFPFPSNKAGDDED 73
Query: 198 MDEEEYQLDMMRRLRRVNV 254
D+ YQ+++MRRLR VN+
Sbjct: 74 DDDVNYQMEVMRRLRAVNI 92
Score = 61.3 bits (142), Expect = 7e-10
Identities = 29/62 (46%), Positives = 41/62 (66%)
Frame = +1
Query: 514 EVPIVIRNSPLTNIMISELTEMIPEEEGSKFLDLGTASVLEGQLRSLMERVDELNQEAIK 693
E+P+VI+NS L N+++ EL E P +FL L T S LE +R LME VDEL Q++ K
Sbjct: 242 EIPLVIKNSSLMNVLLCELDENTPTPSADQFLTLSTGSYLEKNVRVLMESVDELCQDSNK 301
Query: 694 FN 699
++
Sbjct: 302 YH 303
Score = 50.4 bits (115), Expect = 1e-06
Identities = 19/34 (55%), Positives = 28/34 (82%)
Frame = +2
Query: 257 HFHVGWYQSADVGNFLSLSLLESQYHYQTSIEES 358
H HVGWYQS +G++++ +LL+SQY YQ SIE++
Sbjct: 94 HLHVGWYQSTYLGSYINRTLLDSQYSYQKSIEDA 127
Score = 39.1 bits (87), Expect = 0.003
Identities = 14/45 (31%), Positives = 31/45 (68%)
Frame = +2
Query: 374 DTKKSARGFLTLKAYRLTPQAIAMYKEGDYTPEALRNLKIGYENL 508
D ++++G LTLKA+RL+ + + +YK+G+++ + L I + ++
Sbjct: 195 DPLRTSQGMLTLKAFRLSDEMMKLYKDGEFSADKLSKAGISFHSM 239
>SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 322
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +3
Query: 12 PENEATIQYVQCDGLAVMKIVKHCHEES-CSNMEVAQGALLGLVVENRLEITNCFPFPKH 188
P + I V + ++ +V H + + + G LLG + L++ NCF P
Sbjct: 2 PGPDEAITTVVVHPIVLLSVVDHFNRMGKVGSQKRVVGVLLGSRRKGVLDVANCFAVPFD 61
Query: 189 DDTMDEEEYQLD 224
+D D+ + LD
Sbjct: 62 EDDRDQNVWFLD 73
>SB_22901| Best HMM Match : PHD (HMM E-Value=5.3e-05)
Length = 696
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 244 ESMLSFSC-WMVPECRCRQFSKPFVIRVTISLSDLY 348
ES+ + SC W+ P+C FSK + T+ LS+ +
Sbjct: 134 ESLANSSCLWLCPKCDASNFSKTLLSASTLELSNSF 169
>SB_31995| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 71
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 407 LKAYRLTPQAIAMYKEGDYTPEALRNLKIGYENLSLKCQLLSGTL 541
LKAYR PQA A+ D+ + L + +N +C+ TL
Sbjct: 16 LKAYRKAPQAAAIQLMSDHGSQLRSKLLVTIDNFFFECKFQKVTL 60
>SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3066
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -2
Query: 245 SSKPPHHVQLVFLLIHGVVMLWKWEAVGNLQTVLNDQTKESSLSHL 108
S + PH V L + + +W V NL + ++ KES L HL
Sbjct: 1931 SHETPHVVMEFLLSLQQYELAAEWAEVENLPSEIHQTIKESQLKHL 1976
>SB_11179| Best HMM Match : ERM (HMM E-Value=4)
Length = 407
Score = 29.1 bits (62), Expect = 3.6
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Frame = +3
Query: 3 RRAPENEATIQYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVENRLEITNCFPFP 182
+ +P NE + ++ + V K SC + +++QG LL L E +E F
Sbjct: 10 KHSPTNEEFLSHLFMAYVRVADYKKQPQALSCKDKKLSQGMLLPL-AERMVE-----KFA 63
Query: 183 KHDDTMDEEEYQLDMM--RRLRRVNVIIFMLDG 275
K +E E QL +M L + + MLDG
Sbjct: 64 KEGKIKEETEVQLYLMILEALEKYEKALDMLDG 96
>SB_36259| Best HMM Match : PHD (HMM E-Value=5.3e-05)
Length = 790
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 244 ESMLSFSC-WMVPECRCRQFSKPFVIRVTISLSDLY 348
ES+ + SC W+ P+C FS+ + T+ LS+ +
Sbjct: 130 ESLANSSCLWLCPKCDASNFSETLLSASTLELSNSF 165
>SB_25021| Best HMM Match : TP2 (HMM E-Value=2.8)
Length = 643
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2
Query: 344 RSDSDIVTLITKGLENCLHLHSGTIQHENDNIDSSKP 234
RSDSDI T + ++CL S T +++ D S P
Sbjct: 500 RSDSDIYTNGVRMRKSCLRRTSSTCSEDSEEFDYSGP 536
>SB_21083| Best HMM Match : PHD (HMM E-Value=5.3e-05)
Length = 822
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 244 ESMLSFSC-WMVPECRCRQFSKPFVIRVTISLSDLY 348
ES+ + SC W+ P+C FS+ + T+ LS+ +
Sbjct: 134 ESLANSSCLWLCPKCDASNFSETLLSASTLELSNSF 169
>SB_7292| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1126
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 244 ESMLSFSC-WMVPECRCRQFSKPFVIRVTISLSDLY 348
ES+ + SC W+ P+C FS+ + T+ LS+ +
Sbjct: 116 ESLANSSCLWLCPKCDASNFSETLLSASTLELSNSF 151
>SB_55616| Best HMM Match : Exo_endo_phos (HMM E-Value=0.032)
Length = 296
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 244 ESMLSFSC-WMVPECRCRQFSKPFVIRVTISLSDLY 348
ES+ + SC W+ P+C FS+ + T+ LS+ +
Sbjct: 9 ESLANSSCLWLCPKCDASNFSETLLSASTLELSNSF 44
>SB_43853| Best HMM Match : AAA_5 (HMM E-Value=0)
Length = 2065
Score = 28.3 bits (60), Expect = 6.3
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Frame = +1
Query: 133 VWSLRTVWRLPTASHFQSMTTPWMRRNTSWT**GGFEESMLSFSCWMVPECRCRQFSKPF 312
+W T R S TP + +TS T GF E+M+ F W F K F
Sbjct: 1365 IWCPSTDNREDLISIIDHNLTPGITLSTSSTGSSGFGEAMMDFIEWF----HAADFGKRF 1420
Query: 313 VIRVTISLSDL-Y*GECCCDLR 375
V + LS + + CC L+
Sbjct: 1421 VFSIRDLLSWVSFINTCCSSLQ 1442
>SB_39447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2123
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 244 ESMLSFSC-WMVPECRCRQFSKPFVIRVTISLSDLY 348
ES+ + SC W+ P+C FS+ + T+ LS+ +
Sbjct: 1281 ESLANSSCLWLCPKCDASNFSETLLSASTLELSNSF 1316
>SB_33045| Best HMM Match : RVT_1 (HMM E-Value=3.4e-18)
Length = 1061
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 244 ESMLSFSC-WMVPECRCRQFSKPFVIRVTISLSDLY 348
ES+ + SC W+ P+C FS+ + T+ LS+ +
Sbjct: 202 ESLANSSCLWLCPKCDASNFSETLLSASTLELSNSF 237
>SB_26487| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 941
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = -1
Query: 657 HETAKLSFENRCSTQIQKLGSFLFRYHLGELRDH 556
H + ++S R ST Q L LFR H+G LRDH
Sbjct: 800 HHSTRVS-AYRPSTNTQVLIPALFRGHMGLLRDH 832
>SB_24847| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 913
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 244 ESMLSFSC-WMVPECRCRQFSKPFVIRVTISLSDLY 348
ES+ + SC W+ P+C FS+ + T+ LS+ +
Sbjct: 113 ESLANSSCLWLCPKCDASNFSETLLSASTLELSNSF 148
>SB_10962| Best HMM Match : PHD (HMM E-Value=5.3e-05)
Length = 521
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 244 ESMLSFSC-WMVPECRCRQFSKPFVIRVTISLSDLY 348
ES+ + SC W+ P+C FS+ + T+ LS+ +
Sbjct: 134 ESLANSSCLWLCPKCDASNFSETLLSASTLELSNSF 169
>SB_9001| Best HMM Match : PHD (HMM E-Value=0.00096)
Length = 345
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 244 ESMLSFSC-WMVPECRCRQFSKPFVIRVTISLSDLY 348
ES+ + SC W+ P+C FS+ + T+ LS+ +
Sbjct: 134 ESLANSSCLWLCPKCDAYNFSETLLSASTLELSNSF 169
>SB_6668| Best HMM Match : PHD (HMM E-Value=0.00096)
Length = 210
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 244 ESMLSFSC-WMVPECRCRQFSKPFVIRVTISLSDLY 348
ES+ + SC W+ P+C FS+ + T+ LS+ +
Sbjct: 134 ESLANSSCLWLCPKCDAYNFSETLLSASTLELSNSF 169
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,883,460
Number of Sequences: 59808
Number of extensions: 504473
Number of successful extensions: 1378
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1365
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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