Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20588
(699 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003740-3|AAC48137.2| 365|Caenorhabditis elegans Eukaryotic in... 64 1e-10
AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical ... 33 0.20
Z47808-5|CAA87773.1| 294|Caenorhabditis elegans Hypothetical pr... 32 0.45
U23172-18|ABC48253.1| 915|Caenorhabditis elegans Hypothetical p... 31 0.79
U23172-17|ABC48254.1| 923|Caenorhabditis elegans Hypothetical p... 31 0.79
U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with... 29 3.2
U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with... 29 3.2
AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans nonsense-medi... 29 3.2
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ... 28 5.6
Z83231-5|CAB05753.1| 239|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z48055-8|CAA88133.2| 379|Caenorhabditis elegans Hypothetical pr... 28 7.4
AL023847-9|CAA19553.1| 239|Caenorhabditis elegans Hypothetical ... 28 7.4
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 27 9.8
U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily ass... 27 9.8
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 27 9.8
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 27 9.8
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 27 9.8
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 27 9.8
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 27 9.8
AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein. 27 9.8
AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein. 27 9.8
>AF003740-3|AAC48137.2| 365|Caenorhabditis elegans Eukaryotic
initiation factor protein3.H protein.
Length = 365
Score = 63.7 bits (148), Expect = 1e-10
Identities = 31/81 (38%), Positives = 51/81 (62%)
Frame = +2
Query: 266 VGWYQSADVGNFLSLSLLESQYHYQTSIEESVVVIYDTKKSARGFLTLKAYRLTPQAIAM 445
VG+YQS G S L+ES + YQ E+VV+IYD K+ +G L+L+A+RL+ A+ +
Sbjct: 110 VGFYQSHQFGAGFSHDLVESMFDYQAMGPENVVLIYDPIKTRQGQLSLRAWRLSTAALDL 169
Query: 446 YKEGDYTPEALRNLKIGYENL 508
+ D+ PE ++ + Y+N+
Sbjct: 170 ASKNDWRPELVKAAGLTYQNM 190
Score = 52.0 bits (119), Expect = 4e-07
Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 19/95 (20%)
Frame = +3
Query: 27 TIQYVQCDGLAVMKIVKHCHEESCSNM-----EVAQGALLGLVV--ENRLEITNCFPFPK 185
+++++ D L VMKIVKH E + + + G L GLV ++RLEITNCFP +
Sbjct: 11 SVKHILLDSLVVMKIVKHVDSELHAGISEVSGDACAGVLTGLVFLEDSRLEITNCFPTVR 70
Query: 186 HDDTMDE-----EEYQ-------LDMMRRLRRVNV 254
++ MD+ ++Y+ LDM+R+ R +N+
Sbjct: 71 NEPVMDDDANAAQQYEEQKQHEMLDMLRKFRTMNI 105
Score = 45.2 bits (102), Expect = 5e-05
Identities = 22/59 (37%), Positives = 39/59 (66%), Gaps = 3/59 (5%)
Frame = +1
Query: 514 EVPIVIRNSPLTNIMISELT---EMIPEEEGSKFLDLGTASVLEGQLRSLMERVDELNQ 681
E+PI+I++S L N+++SEL+ ++ ++ DLG+ LE +R++M VDELN+
Sbjct: 193 ELPIIIKSSYLNNVLMSELSLAKSCSSDKYSTRHFDLGSKKSLEKSVRAMMANVDELNK 251
>AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical
protein R52.2 protein.
Length = 1019
Score = 33.1 bits (72), Expect = 0.20
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +2
Query: 341 TSIEESV-VVIYDTKKSARGFLTLKAYRLTPQA-IAMYKEGDYTPEALRNLKIGYENLSL 514
T+I ES I+ T+ S LTL + + TP A IA E + TP+ ++ + ++ L
Sbjct: 475 TAIAESQDFPIHSTENSTTSMLTLTSMKYTPDAPIAQLNEAEETPQLPSDVPMLFQEREL 534
Query: 515 KCQLLSGTLH 544
++S T++
Sbjct: 535 PVSMMSTTVN 544
>Z47808-5|CAA87773.1| 294|Caenorhabditis elegans Hypothetical
protein D2013.7 protein.
Length = 294
Score = 31.9 bits (69), Expect = 0.45
Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +3
Query: 99 SNMEVAQGALLGLVVENRLEITNCFPFP---KHDDTMDEEEYQLDMMRRLRRVN 251
+ E G L+G + +++TNCF P +DD ++++ M+ L++ +
Sbjct: 32 TGQEKCMGTLMGYYEKGSIQVTNCFAIPFNESNDDLEIDDQFNQQMISALKKTS 85
>U23172-18|ABC48253.1| 915|Caenorhabditis elegans Hypothetical
protein F25B5.1a protein.
Length = 915
Score = 31.1 bits (67), Expect = 0.79
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = +2
Query: 374 DTKKSARGFLTLKAYRLTPQAIAMYK--EGDYTPEALRNLKIGYENLSLKCQLLSGTL 541
DT+K R + + L+ + +A + EGD T + LKI ++N S++C+ +S L
Sbjct: 240 DTEKQRREDMLTTSKSLSDKLVAEEEVVEGDTTNDDFAKLKIEFKNQSIRCERVSQRL 297
>U23172-17|ABC48254.1| 923|Caenorhabditis elegans Hypothetical
protein F25B5.1b protein.
Length = 923
Score = 31.1 bits (67), Expect = 0.79
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = +2
Query: 374 DTKKSARGFLTLKAYRLTPQAIAMYK--EGDYTPEALRNLKIGYENLSLKCQLLSGTL 541
DT+K R + + L+ + +A + EGD T + LKI ++N S++C+ +S L
Sbjct: 240 DTEKQRREDMLTTSKSLSDKLVAEEEVVEGDTTNDDFAKLKIEFKNQSIRCERVSQRL 297
>U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 1, isoform a
protein.
Length = 2322
Score = 29.1 bits (62), Expect = 3.2
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = -2
Query: 305 LENCLHLHSGTIQHENDNIDSSKPPHHVQLVFLLIHGVVMLWKWEAVGNLQTVLNDQTKE 126
+ + LH T DS V+L +IH V+ W E V T+L+ TK
Sbjct: 566 ISSWLHSLIATACEHQIGSDSFSQREWVRLRNTVIHQSVLTWNNECVNQALTILSTATKW 625
Query: 125 SSL-SHLH 105
S L S +H
Sbjct: 626 SELTSDIH 633
>U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 1, isoform b
protein.
Length = 2019
Score = 29.1 bits (62), Expect = 3.2
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = -2
Query: 305 LENCLHLHSGTIQHENDNIDSSKPPHHVQLVFLLIHGVVMLWKWEAVGNLQTVLNDQTKE 126
+ + LH T DS V+L +IH V+ W E V T+L+ TK
Sbjct: 566 ISSWLHSLIATACEHQIGSDSFSQREWVRLRNTVIHQSVLTWNNECVNQALTILSTATKW 625
Query: 125 SSL-SHLH 105
S L S +H
Sbjct: 626 SELTSDIH 633
>AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans
nonsense-mediated mRNA decay proteinSMG-1 protein.
Length = 2322
Score = 29.1 bits (62), Expect = 3.2
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = -2
Query: 305 LENCLHLHSGTIQHENDNIDSSKPPHHVQLVFLLIHGVVMLWKWEAVGNLQTVLNDQTKE 126
+ + LH T DS V+L +IH V+ W E V T+L+ TK
Sbjct: 566 ISSWLHSLIATACEHQIGSDSFSQREWVRLRNTVIHQSVLTWNNECVNQALTILSTATKW 625
Query: 125 SSL-SHLH 105
S L S +H
Sbjct: 626 SELTSDIH 633
>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
protein F55F10.1 protein.
Length = 4368
Score = 28.3 bits (60), Expect = 5.6
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 9/55 (16%)
Frame = +3
Query: 42 QCDGLAVMKIVKHCHEESCS------NME-VAQ--GALLGLVVENRLEITNCFPF 179
QCD AV+K +K EE CS N+E +A+ G +V ++ +++TNC F
Sbjct: 3521 QCDIQAVVKSLKSIVEEHCSGEKRRKNLEGLAELAGITADIVEQSVIQLTNCLGF 3575
>Z83231-5|CAB05753.1| 239|Caenorhabditis elegans Hypothetical
protein Y57A10C.1 protein.
Length = 239
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = -2
Query: 227 HVQLVFLLIHGVVMLWKWEAVGNLQTVLNDQTKESSLSHLHVAA*FFMTVFHYFHHC 57
H V+LL + + W V +Q T+ S+L ++A FF+ +Y++ C
Sbjct: 110 HCPPVYLLC--CISIEVWHLVSPIQYTFPKTTRLSNLQKFKISAFFFILETYYYYTC 164
>Z48055-8|CAA88133.2| 379|Caenorhabditis elegans Hypothetical
protein T07A5.1 protein.
Length = 379
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/67 (22%), Positives = 29/67 (43%)
Frame = +3
Query: 15 ENEATIQYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVENRLEITNCFPFPKHDD 194
EN+ + Y+Q D ++K+ + S N+ + L L + R EI C H +
Sbjct: 113 ENKTSNDYLQFDTQPARAVLKNFNTFSIGNLHIPSNIPLFLKMWERSEIRGCLNLIVHRN 172
Query: 195 TMDEEEY 215
+++
Sbjct: 173 MTKSQQF 179
>AL023847-9|CAA19553.1| 239|Caenorhabditis elegans Hypothetical
protein Y57A10C.1 protein.
Length = 239
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = -2
Query: 227 HVQLVFLLIHGVVMLWKWEAVGNLQTVLNDQTKESSLSHLHVAA*FFMTVFHYFHHC 57
H V+LL + + W V +Q T+ S+L ++A FF+ +Y++ C
Sbjct: 110 HCPPVYLLC--CISIEVWHLVSPIQYTFPKTTRLSNLQKFKISAFFFILETYYYYTC 164
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +3
Query: 9 APENEATIQYVQCD 50
APE +ATI+YV+CD
Sbjct: 747 APEFQATIEYVECD 760
>U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily
assigned gene nameprotein 152, isoform a protein.
Length = 2560
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -2
Query: 341 SDSDIVTLITKGLENCLHLHSGTIQHENDNIDSSKPPHHV 222
S + +V L++ G+ L LH D I SK P H+
Sbjct: 188 SGAQLVLLMSAGVHPSLSLHDALFPIRADRIRDSKSPTHI 227
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +3
Query: 9 APENEATIQYVQCD 50
APE +ATI+YV+CD
Sbjct: 747 APEFQATIEYVECD 760
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +3
Query: 9 APENEATIQYVQCD 50
APE +ATI+YV+CD
Sbjct: 747 APEFQATIEYVECD 760
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +3
Query: 9 APENEATIQYVQCD 50
APE +ATI+YV+CD
Sbjct: 747 APEFQATIEYVECD 760
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +3
Query: 9 APENEATIQYVQCD 50
APE +ATI+YV+CD
Sbjct: 747 APEFQATIEYVECD 760
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +3
Query: 9 APENEATIQYVQCD 50
APE +ATI+YV+CD
Sbjct: 747 APEFQATIEYVECD 760
>AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein.
Length = 2502
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -2
Query: 341 SDSDIVTLITKGLENCLHLHSGTIQHENDNIDSSKPPHHV 222
S + +V L++ G+ L LH D I SK P H+
Sbjct: 130 SGAQLVLLMSAGVHPSLSLHDALFPIRADRIRDSKSPTHI 169
>AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein.
Length = 2684
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -2
Query: 341 SDSDIVTLITKGLENCLHLHSGTIQHENDNIDSSKPPHHV 222
S + +V L++ G+ L LH D I SK P H+
Sbjct: 312 SGAQLVLLMSAGVHPSLSLHDALFPIRADRIRDSKSPTHI 351
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,044,436
Number of Sequences: 27780
Number of extensions: 387042
Number of successful extensions: 1077
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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