Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20588
         (699 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    27   0.17 
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    24   1.6  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   3.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   3.7  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   4.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   6.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.5  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = -1

Query: 699 IELDRFLIQFINTFHETAKLSFENRCSTQ 613
           IEL R  I F +T H T KL+F+NR  TQ
Sbjct: 162 IELVREEILF-DTVHVTFKLTFDNRAFTQ 189


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -2

Query: 698 LNLIAS*FSSSTRSMRLRSCPSRTDAVPRSKNLD 597
           LN+I+S    S       S P R  +VP +  LD
Sbjct: 71  LNIISSDHDDSDEEYAANSQPPRITSVPNTSRLD 104


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 13/48 (27%), Positives = 19/48 (39%)
 Frame = +2

Query: 341 TSIEESVVVIYDTKKSARGFLTLKAYRLTPQAIAMYKEGDYTPEALRN 484
           TS +   V+ Y   KS +GF     +   P+   +       P  LRN
Sbjct: 163 TSSQNIAVIEYRIPKSGKGFSLFARFLKNPRPCNVLATSLTEPYTLRN 210


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -1

Query: 216 GIPPHPWCRHALEMGSSW*SPDGSQRPNQGELPEPPPC 103
           G+ PH   R     GS+    D   R +  + P+PP C
Sbjct: 534 GLCPH---RRRANSGSTSSGDDELHRASLSKTPQPPQC 568


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 74  HYFHHCQSIALNILDRRFI 18
           H++HHC  I   I   RFI
Sbjct: 471 HHWHHCPEIYKAIEGIRFI 489


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 138 PNQGELPEPPPCCCMILHDSVS 73
           P    +P+P P  C ++  SVS
Sbjct: 582 PKLKGIPDPXPNTCKVIASSVS 603


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -3

Query: 400 ESSG*FLCIVNHN 362
           E SG +LCIVN++
Sbjct: 280 EDSGKYLCIVNNS 292


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 284 HSGTIQHENDNIDSS 240
           +S +I+HE+DN D S
Sbjct: 220 NSNSIKHESDNSDYS 234


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,564
Number of Sequences: 438
Number of extensions: 4410
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)