Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20588
         (699 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g10840.1 68414.m01246 eukaryotic translation initiation facto...    76   2e-14
At1g10840.2 68414.m01245 eukaryotic translation initiation facto...    66   2e-11
At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory su...    32   0.42 
At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory su...    32   0.42 
At4g14800.1 68417.m02275 20S proteasome beta subunit D2 (PBD2) (...    29   2.2  
At5g22355.1 68418.m02608 DC1 domain-containing protein contains ...    29   3.9  
At3g22630.1 68416.m02857 20S proteasome beta subunit D (PBD1) (P...    29   3.9  
At5g44960.1 68418.m05514 F-box family protein contains F-box dom...    28   5.2  
At1g18160.1 68414.m02256 protein kinase family protein contains ...    28   5.2  
At1g14750.1 68414.m01763 cyclin, putative (SDS) identical to cyc...    28   5.2  
At1g11330.1 68414.m01301 S-locus lectin protein kinase family pr...    27   9.0  

>At1g10840.1 68414.m01246 eukaryotic translation initiation factor 3
           subunit 3 / eIF-3 gamma / eIF3h (TIF3H1) identical to
           SP|Q9C5Z2 Eukaryotic translation initiation factor 3
           subunit 3 (eIF-3 gamma) (eIF3 p38 subunit) (eIF3h)
           {Arabidopsis thaliana}; contains Pfam profile PF01398:
           Mov34/MPN/PAD-1 family
          Length = 337

 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 42/79 (53%), Positives = 52/79 (65%), Gaps = 4/79 (5%)
 Frame = +3

Query: 30  IQYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVENRLEITNCFPFPKHDD----T 197
           ++ VQ +GLAV+KI+KHC E S +   +  G LLGL V + LE+TNCFPFP  DD     
Sbjct: 22  LRVVQIEGLAVLKIIKHCKEFSPT---LVTGQLLGLDVGSVLEVTNCFPFPVRDDDEEIE 78

Query: 198 MDEEEYQLDMMRRLRRVNV 254
            D   YQL+MMR LR VNV
Sbjct: 79  ADGANYQLEMMRCLREVNV 97



 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 29/81 (35%), Positives = 51/81 (62%)
 Frame = +2

Query: 266 VGWYQSADVGNFLSLSLLESQYHYQTSIEESVVVIYDTKKSARGFLTLKAYRLTPQAIAM 445
           VGWYQS  +G++ ++ L+E+  +YQ +I+  V +IYD  K+  G L LKA +L+   + +
Sbjct: 102 VGWYQSTVLGSYQTVELIETFMNYQENIKRCVCIIYDPSKADLGVLALKALKLSDSFMEL 161

Query: 446 YKEGDYTPEALRNLKIGYENL 508
           Y+ G++T E LR     + ++
Sbjct: 162 YRGGNFTGEKLREKNFSWMDI 182


>At1g10840.2 68414.m01245 eukaryotic translation initiation factor 3
           subunit 3 / eIF-3 gamma / eIF3h (TIF3H1) identical to
           SP|Q9C5Z2 Eukaryotic translation initiation factor 3
           subunit 3 (eIF-3 gamma) (eIF3 p38 subunit) (eIF3h)
           {Arabidopsis thaliana}; contains Pfam profile PF01398:
           Mov34/MPN/PAD-1 family
          Length = 250

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 29/81 (35%), Positives = 51/81 (62%)
 Frame = +2

Query: 266 VGWYQSADVGNFLSLSLLESQYHYQTSIEESVVVIYDTKKSARGFLTLKAYRLTPQAIAM 445
           VGWYQS  +G++ ++ L+E+  +YQ +I+  V +IYD  K+  G L LKA +L+   + +
Sbjct: 15  VGWYQSTVLGSYQTVELIETFMNYQENIKRCVCIIYDPSKADLGVLALKALKLSDSFMEL 74

Query: 446 YKEGDYTPEALRNLKIGYENL 508
           Y+ G++T E LR     + ++
Sbjct: 75  YRGGNFTGEKLREKNFSWMDI 95


>At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory
           subunit 7, putative / 26S proteasome regulatory subunit
           S12, putative / MOV34 protein, putative contains
           similarity to 26s proteasome regulatory subunit s12
           (proteasome subunit p40) (mov34 protein) SP:P26516 from
           [Mus musculus]; contains Pfam profile PF01398:
           Mov34/MPN/PAD-1 family
          Length = 308

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 18/66 (27%), Positives = 31/66 (46%)
 Frame = +3

Query: 27  TIQYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVENRLEITNCFPFPKHDDTMDE 206
           TI+ V    L ++ IV H +  +  + +   G LLG      +++TN +  P  +D  D 
Sbjct: 13  TIEKVVVHPLVLLSIVDHYNRVAKDSSKRVVGVLLGSSSRGVVDVTNSYAVPFEEDDKDP 72

Query: 207 EEYQLD 224
             + LD
Sbjct: 73  SIWFLD 78


>At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory
           subunit 7, putative / 26S proteasome regulatory subunit
           S12, putative / MOV34 protein, putative contains
           similarity to 26S proteasome regulatory subunit S12
           (MOV34) SP:P26516 from [Mus musculus]
          Length = 310

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = +3

Query: 27  TIQYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVENRLEITNCFPFPKHDDTMDE 206
           TI+ V    L ++ IV H +  +    +   G LLG      +++TN +  P  +D  D 
Sbjct: 13  TIEKVIVHPLVLLSIVDHYNRVAKDTSKRVVGVLLGSSSRGTVDVTNSYAVPFEEDDKDT 72

Query: 207 EEYQLD 224
             + LD
Sbjct: 73  SIWFLD 78


>At4g14800.1 68417.m02275 20S proteasome beta subunit D2 (PBD2)
           (PRCGA) identical to SP|O24633 Proteasome subunit beta
           type 2-2 (EC 3.4.25.1) (20S proteasome alpha subunit D2)
           {Arabidopsis thaliana}, cDNA proteasome subunit prcga
           GI:2511571
          Length = 199

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
 Frame = +2

Query: 221 GHDEEASKSQCYHFHVGWYQSAD-----VGNFLSLSLLESQYHYQTSIEESVVVI 370
           G+D+EA  S  Y  ++      D      G++ SLS ++  Y    S+EE++ ++
Sbjct: 105 GYDKEAGASLYYIDYIATLHKVDKGAFGYGSYFSLSTMDRHYRSDMSVEEAIELV 159


>At5g22355.1 68418.m02608 DC1 domain-containing protein contains
           Pfam PF03107: DC1 domain; similar to ULI3 [Arabidopsis
           thaliana] GI:17225050
          Length = 664

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +1

Query: 262 SCWMVPECRCRQFSKPFVIRV-TISLSDLY*GECCCDLRYKEISQRILDFEGLSFDTSGY 438
           S W V + RC   S+P +       L   +  + CCD  YKEI   +L  +   FD   +
Sbjct: 477 SDWWVLDVRCGSRSEPVIHDGHRHPLYYEHKKDHCCDACYKEIDGYLLSCDTCDFDLDLH 536

Query: 439 C 441
           C
Sbjct: 537 C 537


>At3g22630.1 68416.m02857 20S proteasome beta subunit D (PBD1)
           (PRGB) identical to GB:CAA74026 from [Arabidopsis
           thaliana] ( FEBS Lett. (1997) 416 (3), 281-285);
           identical to cDNA proteasome subunit prgb GI:2511589
          Length = 204

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
 Frame = +2

Query: 221 GHDEEASKSQCYHFHVGWYQSAD-----VGNFLSLSLLESQYHYQTSIEESVVVI 370
           G+D+E+  S  Y  ++      D      G++ SLS ++  Y    S+EE++ ++
Sbjct: 105 GYDDESGASLYYIDYIATLHKVDKGAFGYGSYFSLSTMDRHYRSDMSVEEAIELV 159


>At5g44960.1 68418.m05514 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 416

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
 Frame = -1

Query: 693 LDRFLIQFINTFHETAKLSF-----ENRCSTQIQKLGSFLFRY 580
           LD F +QF N  HE   + F     E+ C +++QK   F+ RY
Sbjct: 47  LDLFSLQFTNPHHEEGLIKFMDRFMESNCRSRLQK---FMIRY 86


>At1g18160.1 68414.m02256 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 992

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +3

Query: 192 DTMDEEEYQLDMMRRLRRVNVIIFMLDGTR 281
           + ++E   ++ MMRRLR  N+++FM   TR
Sbjct: 752 EALEEFRSEVRMMRRLRHPNIVLFMGAVTR 781


>At1g14750.1 68414.m01763 cyclin, putative (SDS) identical to
           cyclin-like protein [Arabidopsis thaliana] GI:20302467;
           low similarity to SP|P30278 G2/mitotic-specific cyclin 2
           (B-like cyclin) (CycMs2 {Medicago sativa}; contains Pfam
           profiles PF00134: Cyclin, N-terminal domain, PF02984:
           Cyclin, C-terminal domain
          Length = 578

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = -2

Query: 338 DSDIVTLITKGLENCLHLHSGTIQHENDNIDSSKPPHHVQ 219
           +SD+V++I+ G+E C    S T   +N+ I+ SKP   V+
Sbjct: 185 ESDVVSVIS-GVEYCSKFGSVTGGADNEEIEISKPSSFVE 223


>At1g11330.1 68414.m01301 S-locus lectin protein kinase family
           protein contains Pfam domains, PF00954: S-locus
           glycoprotein family, PF00069: Protein kinase domain, and
           PF01453: Lectin (probable mannose binding)
          Length = 840

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 8/17 (47%), Positives = 15/17 (88%)
 Frame = -2

Query: 431 EVSNDRPSKSRILWLIS 381
           EV+NDRP+ S ++W+++
Sbjct: 778 EVANDRPNVSNVIWMLT 794


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,224,917
Number of Sequences: 28952
Number of extensions: 365830
Number of successful extensions: 985
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)