Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20586
         (586 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    25   0.36 
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    23   1.4  
AY052395-1|AAL15469.1|   76|Tribolium castaneum tryptophan oxyge...    22   4.4  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    22   4.4  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    22   4.4  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       21   5.8  

>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 25.4 bits (53), Expect = 0.36
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 173 PILGAKDDVAPTSPPT 126
           PIL  K  V+PT+PPT
Sbjct: 85  PILAEKVSVSPTTPPT 100


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 297 EQQLSGLVCFELSADSDLETLPVTCGLGNVITHL 196
           E+ + GLVCF L A +++    +    G  + HL
Sbjct: 400 EEVVLGLVCFRLKASNEINEALLKRLNGRGVIHL 433


>AY052395-1|AAL15469.1|   76|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 76

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 519 CGGLPPQYIQLTVLCQESLLLSQKGTGPL 433
           CG L  +Y+ L  + +   LLS++   P+
Sbjct: 20  CGMLYGEYLMLDKILEAQRLLSEQNNQPV 48


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 519 CGGLPPQYIQLTVLCQESLLLSQKGTGPL 433
           CG L  +Y+ L  + +   LLS++   P+
Sbjct: 20  CGMLYGEYLMLDKILEAQRLLSEQNNQPV 48


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 519 CGGLPPQYIQLTVLCQESLLLSQKGTGPL 433
           CG L  +Y+ L  + +   LLS++   P+
Sbjct: 20  CGMLYGEYLMLDKILEAQRLLSEQNNQPV 48


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = -2

Query: 456 SQKGTGPLICFS*SSQFRLHPQGRCCRCV*YFSAFYDHE 340
           S + + P IC        L   G  C+C   F+  Y HE
Sbjct: 29  SGRNSAPSICGEHGHCVNLPGVGHRCQCQPGFTGKYCHE 67


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,363
Number of Sequences: 336
Number of extensions: 3280
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14621740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)